Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00960 ATGGATGAAGGCGAGGGAGGGTACGGTGAGAGCGGCGATCCCATGGATCAGTTTCACCGTAACGAAGCTATATCCGCAGTCGCGGACGATGGTTTCATGGCAGAGGAAGATGATGATTATGAAGATCTTTACAACGATGTCAACGTCGGAGAAGGGTTCCTTCAGTCTTTGCGCAAAAATGAGGATTCGGGCTTCCGAAACGATGATGTCGAGGAGAAGAAGCCTCCGCCGCCCCCGCCGCCCCCGCCAGTTCCTGATGCTCCCGTGGTTTCGATTTCGGGTGTTGGTGACGGGGGAGAGGGTGTCGGAGGTGGCGGAAGTGGGATTGTAGAGTCTAGGGTTTCGGGGAGAGTTGATGGATTTCAGAATCAAGGGTTTAGAGGGAACGAGGTGGGTGCCAAAGGTGGGATCAGGGTTGAATTGGGGCACCAATCTGTGAAATCTGATATTGAGGAACAGGGTGGTAATGACGGGGCTGTACTTCCAGGGATTGAGCAGCAGTCACATGGCGGGGTTGTTGGGAGTGTGGGAAATGAGGGTTTAGCGAGACAAGGTCAAGGTGGGGGAGGAGGGGGTAGTGCTAATAGGGTTGGTGGAAATGGTGTTGGGAACAGTGTGGGCGCTGTTAATAGTGTTAGTACCGCAGGAGTTGGTGGTGGTGGTGGTGGTGGCGGTGGTAGTGGTGCTTCCGGTGGTACTATATTGTTTGTTGGTGATTTGCATTGGTGGACTACTGATGCTGAGCTGGAAACTGAGCTTAGTAAGTATGGATCCGTTAAGGAGGTGAAGTTTTTCGATGAGAAGGCTAGTGGGAAGTCGAAGGGGTATTGCCAAGTTGAGTTTTTTGACCCTTCTGCTGCCACAAATTGCAAGGAGGGAATGAATGGTCATGTTTTTAATGGGAGACCATGTGTTGTTGCGTTTGCATCACCTTTTACAGTTAAGAAAATGGGGGAGGCTCAGATAAACAGAAATCAGCAGATGAACCCATCTGCAGTTACACAACAGGGAAGAAGGGGACCTTCTGATTCAGGGGCTAAGCCTGGTGGGGGTAATATTTCTACAGGTGGTAATTACCAAGGAGGAGATGGGAATAGAGGTTATGGGAGAGGAGGTAATTGGGGAAGAGGGAACAATCCTGGTATGGGGAATAGGGGGCCTGTGAATCCAATGAGGAATAGGGGTGGTGGGATGGGTGGTAGAGGTATAATGGGTCACGGTGGAAATGGTTTTGGACAGGGTATTGGTGGTACCCCTCCCCTGTTGCATCCTCAGTCAATGATGAGTCAGGGTTTTGATCCTGCTTTTGGTGGTCCTATGGGTAGAATGGGTAGCTATGGAGGCTTTCCTGGTGCTCCAACGCCTCCATTTTCTGGGATCTTACCATCATTCCCTGGTGTTGGAGGTGTTGGTTTGCCTGGAGTAGCACCTCATGTTAATCCTGCATTCTTTGGAAGGGGGATGCCAGTTAATGGTATGGGGATGATGCCTACATCTGGCATGGATGGTCCTAATATGGGGATGTGGTCGGATCCAAATATGGGTGGATGGGGTGGGGAAGAGCCTGGTGGTGGGAAGGCTGGAGAGTCAAGTTATGGGGAGGAAGCTGCATCTGACCATCAGTATGGTGAAGTGAGTCATGATAGAGCTGGATGGCCTATGAGGGAGAAAGATAGAGGTTCAGAACGAGACTGGTCTGGTTCTTCTGAGAGAAGGTATAGGGATGATAGAGATCAAGGATATGAGAGAGATGCACCTAGAGAGAAAGATACGGGCCATGATCCTGAGTGGTCTGAAAGAAGGCATCGTGATGATAGAGAAACTGGCCGAGAACGGTCTCGTGATCGTGACCGTGAACGATCGCGTGACCGTGAAAGGGATCATCGTGAACGTGACAGACACCGGGAAGATAGGGACCGGTATGCAGATCATCATAGGTATAGAGATCGGGAAGCAGAGCATGATGATGAGTGGGATAGGGGACGATCATCTAGGACTCACAGCAAGTCGCGGTTATCACAAGAGGAGGAGCACCATTCAAGGCCAAGAGATGCTGATTATGGGAAGAGGCGAAGGCTTACTTCTGAATAA 2091 0.5069 MDEGEGGYGESGDPMDQFHRNEAISAVADDGFMAEEDDDYEDLYNDVNVGEGFLQSLRKNEDSGFRNDDVEEKKPPPPPPPPPVPDAPVVSISGVGDGGEGVGGGGSGIVESRVSGRVDGFQNQGFRGNEVGAKGGIRVELGHQSVKSDIEEQGGNDGAVLPGIEQQSHGGVVGSVGNEGLARQGQGGGGGGSANRVGGNGVGNSVGAVNSVSTAGVGGGGGGGGGSGASGGTILFVGDLHWWTTDAELETELSKYGSVKEVKFFDEKASGKSKGYCQVEFFDPSAATNCKEGMNGHVFNGRPCVVAFASPFTVKKMGEAQINRNQQMNPSAVTQQGRRGPSDSGAKPGGGNISTGGNYQGGDGNRGYGRGGNWGRGNNPGMGNRGPVNPMRNRGGGMGGRGIMGHGGNGFGQGIGGTPPLLHPQSMMSQGFDPAFGGPMGRMGSYGGFPGAPTPPFSGILPSFPGVGGVGLPGVAPHVNPAFFGRGMPVNGMGMMPTSGMDGPNMGMWSDPNMGGWGGEEPGGGKAGESSYGEEAASDHQYGEVSHDRAGWPMREKDRGSERDWSGSSERRYRDDRDQGYERDAPREKDTGHDPEWSERRHRDDRETGRERSRDRDRERSRDRERDHRERDRHREDRDRYADHHRYRDREAEHDDEWDRGRSSRTHSKSRLSQEEEHHSRPRDADYGKRRRLTSE 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00960 696 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 20 631 IPR034772 -
Viun6g00960 696 SMART rrm1_1 234 307 IPR000504 GO:0003723
Viun6g00960 696 MobiDBLite consensus disorder prediction 1 111 - -
Viun6g00960 696 MobiDBLite consensus disorder prediction 61 75 - -
Viun6g00960 696 MobiDBLite consensus disorder prediction 152 199 - -
Viun6g00960 696 SUPERFAMILY RNA-binding domain, RBD 225 318 IPR035979 GO:0003676
Viun6g00960 696 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 235 304 IPR000504 GO:0003723
Viun6g00960 696 MobiDBLite consensus disorder prediction 323 341 - -
Viun6g00960 696 CDD RRM_CFIm68_CFIm59 235 308 - -
Viun6g00960 696 Gene3D - 227 372 IPR012677 -
Viun6g00960 696 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 233 311 IPR000504 GO:0003723
Viun6g00960 696 MobiDBLite consensus disorder prediction 31 45 - -
Viun6g00960 696 MobiDBLite consensus disorder prediction 540 696 - -
Viun6g00960 696 MobiDBLite consensus disorder prediction 323 399 - -
Viun6g00960 696 MobiDBLite consensus disorder prediction 502 696 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00960 Viun-Chr6 19193827 19198609 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00960 213 309 Eukaryotic Initiation Factors Gene Family AT4G34110 31.313 2.70e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00960 K14398 - gmx:100782869 921.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g00960 6 19193827 19198609 Viun6g00960 6 19193827 19198609 ECH