Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00959 ATGGACGAAGGCGAGGGAGGGTACGGTGAGAGCGGCGGCGATCCCATGGATCAGTTCCACCGTAACGAAGCTATTTCTGCTGTCGCTGACGATGGGTTTTTGGCCGAGGAAGACGACGATTATGAGGATCTATACAACGATGTCAACGTCGGCGAAGGGTTCCTTCAATCTTTGCGCAAAAATGATGATTCCGGGTTCCGAAACGAGGATGTCGAGGACAAGAAGCCACTGCCGCCTCCGCCTGTTCTTGATGCCGCTGGGATTTCGATTCCGGGTGTCGGTGGCGGTGGAGAGGGGGTTAGCGCTGGTGGAAGCGGGGTTGTGGAATCTAGGACTTCTGGGAGAGTTGATGGTTTTCAGAATCAAGGGTTTAGATCAAACGATGTTGGTGCCAAAGGTGGAATTAGGGTTGAATTAGGGCATCAATCTGATAAATTGAGTGAAATTGAAGACCAGGGTGGTAATGATGGTGCTGCAGTGCAGGGGATTGGACAACAACCGCATGCTGGAGTTGTTGGGAGTGTGGGAAATGAGGGTATAGTGAGACAAGGTCAAGGTGGTGGTAGTGTTGGTGGTGGTGGAGGAGGAGGAGGAGGAAATGCTAATAGGGTTGGTGGGAATGGTGTTGGAAACAGTGTGGGTGCTGTTAATAGTGTTAGTACTGGAGGAGTTGGAGGGGGAGGTGGGGGTGCTGCTGGTTCTGGTGGTACTATATTGTTTGTTGGTGATTTGCATTGGTGGACCACTGATGCCGAACTGGAAACTGAGCTTAGTAAGTATGGACCTGTTAAGGAGGTGAAGTTTTTCGATGAGAAGGCTAGCGGGAAGTCAAAGGGGTATTGTCAAGTTGAGTTTTTTGACCCTTCTGCTGCAACAAATTGCAAGGAGGGAATGAATGGTCATGTTTTTAACGGGAGACCTTGTGTTGTTGCGTTTGCATCACCTTTTACAGTTAAGAAAATGGGGGAGGCTCAGATAAACAGGAATCAGCAGATGAACCCATCTGCTGTTACACAACAGGGAAGGAGGGGGCCTTCTGATTCGGGGGCTAAGCCTGGTGGGGGTAATATTTCTACAGGTGGTAATTACCAAGGAGGAGATGGGAATAGAGGTTATGGGAGAGGAGGTAATTGGGGAAGAGGGAACAATCCTGGTATGGGGAATAGGGGGCCTGTGAATCCAATGAGGAATAGGGGTGGTGGGATGGGTGGTAGAGGTATAATGGGTCACGGTGGAAATGGTTTTGGACAGGGTATTGGTGGTACCCCTCCACTGTTGCATCCTCAGTCAATGATGAGTCAGGGTTTTGATCCTGCTTTTGGTGGTCCAATGGGTAGAATGGGTAGCTATGGAGGCTTTCCTGGTGCTCCGACCCCTCCATTTTCTGGGATTTTACCATCATTCCCTGGTGTTGGAGGTGTTGGTTTGCCTGGAGTGGCACCTCATGTTAATCCTGCATTCTTTGGAAGAGGGATGCCAGTTAATGGTATGGGGATGATGCCTACATCAGGCATGGATGGTCCTAACATGGGGATGTGGTCAGATCCAAATATGGGTGGATGGGGTGGGGAAGAGCCTGGTGGTGGGAAGGCTGGAGAGTCAAGTTATGGGGAGGAAGCTGCATCTGACCATCAGTATGGTGAAGTGAGTCATGATAGAGCTGGGTGGCCTATGAGGGAGAAAGATAGAGGTTCAGAAAGGGACTGGTCTGGTTCTTCTGAGAGAAGGTACAGGGATGATAGAGATCAAGGATATGAGAGAGATGCCCCTAGGGAGAAAGATATGGGCCATGATCCTGAGTGGTCTGAAAGAAGACATCGCGATGATAGAGAAACTGTGCGAGAACGGTCCCGTGATCGTGACAGGGAAAGATCTCGTGACCGTGATCGTGAACGTTCTCGAGATCGTGACCGCGACCGCGAAAGGGATCACCGTGAGCGTGACAGACACAGAGAAGATAGGGACAGATATGCAGATCATCATAGGTATAGAGATGGGGAAGCAGAGCATGATGATGAGTGGGAGAGGGGACGGTCATCAAGGACACACAGCAAATCACGGTTATCACAGGAGGAGGAACACCATTCTAGGCCGAGAGATGCTGATTATGGGAAGAGGAGACGGCTTACTTCTGAATAA 2139 0.5026 MDEGEGGYGESGGDPMDQFHRNEAISAVADDGFLAEEDDDYEDLYNDVNVGEGFLQSLRKNDDSGFRNEDVEDKKPLPPPPVLDAAGISIPGVGGGGEGVSAGGSGVVESRTSGRVDGFQNQGFRSNDVGAKGGIRVELGHQSDKLSEIEDQGGNDGAAVQGIGQQPHAGVVGSVGNEGIVRQGQGGGSVGGGGGGGGGNANRVGGNGVGNSVGAVNSVSTGGVGGGGGGAAGSGGTILFVGDLHWWTTDAELETELSKYGPVKEVKFFDEKASGKSKGYCQVEFFDPSAATNCKEGMNGHVFNGRPCVVAFASPFTVKKMGEAQINRNQQMNPSAVTQQGRRGPSDSGAKPGGGNISTGGNYQGGDGNRGYGRGGNWGRGNNPGMGNRGPVNPMRNRGGGMGGRGIMGHGGNGFGQGIGGTPPLLHPQSMMSQGFDPAFGGPMGRMGSYGGFPGAPTPPFSGILPSFPGVGGVGLPGVAPHVNPAFFGRGMPVNGMGMMPTSGMDGPNMGMWSDPNMGGWGGEEPGGGKAGESSYGEEAASDHQYGEVSHDRAGWPMREKDRGSERDWSGSSERRYRDDRDQGYERDAPREKDMGHDPEWSERRHRDDRETVRERSRDRDRERSRDRDRERSRDRDRDRERDHRERDRHREDRDRYADHHRYRDGEAEHDDEWERGRSSRTHSKSRLSQEEEHHSRPRDADYGKRRRLTSE 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00959 712 CDD RRM_CFIm68_CFIm59 239 312 - -
Viun6g00959 712 MobiDBLite consensus disorder prediction 178 204 - -
Viun6g00959 712 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 239 308 IPR000504 GO:0003723
Viun6g00959 712 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 237 315 IPR000504 GO:0003723
Viun6g00959 712 MobiDBLite consensus disorder prediction 327 345 - -
Viun6g00959 712 MobiDBLite consensus disorder prediction 1 24 - -
Viun6g00959 712 MobiDBLite consensus disorder prediction 56 81 - -
Viun6g00959 712 MobiDBLite consensus disorder prediction 506 712 - -
Viun6g00959 712 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 21 645 IPR034772 -
Viun6g00959 712 SMART rrm1_1 238 311 IPR000504 GO:0003723
Viun6g00959 712 MobiDBLite consensus disorder prediction 62 77 - -
Viun6g00959 712 SUPERFAMILY RNA-binding domain, RBD 226 322 IPR035979 GO:0003676
Viun6g00959 712 MobiDBLite consensus disorder prediction 327 403 - -
Viun6g00959 712 MobiDBLite consensus disorder prediction 544 712 - -
Viun6g00959 712 Gene3D - 231 377 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00959 Viun-Chr6 19180936 19185932 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00959 214 313 Eukaryotic Initiation Factors Gene Family AT4G34110 29.000 6.80e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00959 K14398 - gmx:100782869 942.954