Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00947 ATGGCTGAAAATGCAGTGACCCTTATAGCTCTTCTAGCTGAAAAATTGTTGAAGTTAGTGAAAGATGAAGGAAGAATTTTAAGAGGGGTTCACAGTGATGTTAAACACATCGAGAATCTCCTAAACCAAATCAAACCTTTGACGAAGGATGCAGTGGAGAAGGTGCTGAATGAAGGAGTGAAACATTGGATGAATGATTTGAGGAACGTGGTGTTTCGCATGGAGGATGTTGTTGATCTCTACTTGTTCAAAGTGGCAAAACGTGATGGAGTTCGTTTTGGAATGACCAAGCTCAAAGGGAAGATCAGAAGTGTAAAACATCGTCATCGTATATCATCTGAGATTGGAGATATCAAGCAAACCCTATCTAATATATTCATTCTCAGCACAAGTCTAGGACTCCAACCATTTCATGGACAGACTCTTCCCGATGAAATTCCAAGGTTAGGAGCTCATTTAGTTGAGGAATCTCAACTTGTTAGTATTGAACATAACATGCAAAACCTCACAGCTTGGCTGAGACAAAATAATAGTCCAGTGTTGGTGGTGGTAGGCCCACCGGGGATAGGTAAAACTACAATAGTGAAGAATGTGTATAACAAGCAAACGAAATTGAACCAGCAGAAGAAGAAACACAAGAAGGATTTCGACTTTTTTGTATGGATAACCATGCCTCGAACTCAAGCTGATTCTTTGTACCCAATAAGGCAAATTAAAGAAAACATACTTTTGGCAGATCCTCATGGATCAACTTCATTGAGGAATGCAACAATGGAGGATCTTGCACAAAGATTGAGAGAATACCTCACAGGTAAGACATGTCTCATTGTGTTAGATGATGTGAGGGAGCTAAAAATTTGGAACGTTATCAAATTTGCCATACCTCAACATAGGGTTATTATCACTACACAAAGTGCTAATTTTCCGAATAATATTGGAACTGATACAACTGTTGAAGAATTCAGGTTAGGACCTTTGTCTTTAGAACATGCTTTGATGCTCTTTCACCAGAAGGTTAAGCATGTGAAATTCCCCGAGTTGAGTGATTTGTCAAAAAAATTCATGGAAAAATGCAATGGGGTGCCACTGGCCATTGTGGCCATTTCTAGTCTCCTTTCCACGAAGAAATCTGCCATTGAATGGAAAAGGGTACTTGAAAATCTTGGATCATTATTGAAAAGTAACCCTCATCTTGAAATGGTTCAACATGTAAAGTTGCAAAGTTACCAAGAACTTCCTTTTCGCCTCAAACAATGCTTCTTATACTTTGGCCTTTTCCCTCAGGGCTATTCTATTAGTTGCAAGAGGCTCATTCGCTTGTGGATAGCAGAGGATTTTGTAGAAGGAGATACCCAGAACCAGAACACATCAATGGAGGAATTTGGAGATGAATACCTGGCTGAACTAATCTGCAGAGGTTTGGTTCATGGTTCAAGACTTGATTTTGATGGAAGACCAAGAAGTTGTCACGTGTATAACCTCATGCACGAGACCATAGCTAGGATTTGTGAAGATCAGATGTTTTGTCATGTGATGGAAGATGCAAGCACACCAGTGAACTCCAACATGGATTTCATTCTTAGGCGTTTATCAGTTATAAGGAAGAATGGTTCTGCTACCATGGAAAGAGACCATAAGTGGGGAAAAGTGAGGTCTTGTTTTGTTTTCGATGATGCTAAGAAGTTTCAGGTGAACAACCATTTTTTCTCTAGTTTTGAGTTTTTGATTCGATTAGACTTGTCTGATGCATGTCTATCTGTTGATGTTCTTCCTGAACAAGTTGGAAATCTATTCAACTTGAAATACTTGAGCCTAAGGAACACCAACATAAAGTCACTTCCGAAGTCCATTGGAAACCTAGAGAATCTGCAGACTCTAGACCTAAAACAAACTAAAGTGCATGAAGTGAAGATCAATAAGCTTGTCAAGTTACGCCATCTCCTAGCTTACTATGTCAGTGATCAAAGTTCAGAATTGTACTGTTTAGAAGGACTAAGGTTAAGTGAAGGAGTTCAAAATCTAGAATCATTGCAGAATCTATCATATTTAGATGTAAGTGGTGGTAGCATAATAACGGGACTGCAAAAACTAACCAAGTTAAGGAAGTTGGGAATTATAAAGCTAGAAGCACAACATGGTGAAGCACTGTGCAATTCTATAGAGCACATGATGAATCTATGTTCTCTGAGCATTGGGGCTTTGGGAAAAGAAGGCATGCTAAAGTTAGAATCTTTAAGGTATCCTCCACTGTCCCTTAAACGCCTTTACCTATATGGGCGTTTAGGAACACTTCCAACATGGATATCAAATCTTCCAAATCTTATCAGATTGTACTTGAAGTGGTCTGATCTAAAGCAAGATCCATTAGATTACCTTAAGGAGCTGCCACAGTTGTTGCACCTTGAGTTGTATGATGCATATAAAGGTGAAAAGTTGCATTTCAGAAATGGATGGTTGAAACTGAAGGTTTTGTACTTAGGATTGTTGCCAAAGTTGAAGAGCATAGAGATTGGTAAGGGAAAAGTTCCTTGTCTTGAAGTATTGAAGATAGGGAGATGCCATCAAATGATAAGGCTCCCCAGAGATATACAAAACTTGAAGCATCTTGAAAAGCTTTATCTTTATGATATGCATGAACAGTTTGTAGAAAGATTATGTGATGAGCGAAGTGAAGACTATTGGATTATTAACAAAATACCTCTCGTGGAATACTCCAACAACGACCATTTTGCCTTTTTTTCATGA 2745 0.3872 MAENAVTLIALLAEKLLKLVKDEGRILRGVHSDVKHIENLLNQIKPLTKDAVEKVLNEGVKHWMNDLRNVVFRMEDVVDLYLFKVAKRDGVRFGMTKLKGKIRSVKHRHRISSEIGDIKQTLSNIFILSTSLGLQPFHGQTLPDEIPRLGAHLVEESQLVSIEHNMQNLTAWLRQNNSPVLVVVGPPGIGKTTIVKNVYNKQTKLNQQKKKHKKDFDFFVWITMPRTQADSLYPIRQIKENILLADPHGSTSLRNATMEDLAQRLREYLTGKTCLIVLDDVRELKIWNVIKFAIPQHRVIITTQSANFPNNIGTDTTVEEFRLGPLSLEHALMLFHQKVKHVKFPELSDLSKKFMEKCNGVPLAIVAISSLLSTKKSAIEWKRVLENLGSLLKSNPHLEMVQHVKLQSYQELPFRLKQCFLYFGLFPQGYSISCKRLIRLWIAEDFVEGDTQNQNTSMEEFGDEYLAELICRGLVHGSRLDFDGRPRSCHVYNLMHETIARICEDQMFCHVMEDASTPVNSNMDFILRRLSVIRKNGSATMERDHKWGKVRSCFVFDDAKKFQVNNHFFSSFEFLIRLDLSDACLSVDVLPEQVGNLFNLKYLSLRNTNIKSLPKSIGNLENLQTLDLKQTKVHEVKINKLVKLRHLLAYYVSDQSSELYCLEGLRLSEGVQNLESLQNLSYLDVSGGSIITGLQKLTKLRKLGIIKLEAQHGEALCNSIEHMMNLCSLSIGALGKEGMLKLESLRYPPLSLKRLYLYGRLGTLPTWISNLPNLIRLYLKWSDLKQDPLDYLKELPQLLHLELYDAYKGEKLHFRNGWLKLKVLYLGLLPKLKSIEIGKGKVPCLEVLKIGRCHQMIRLPRDIQNLKHLEKLYLYDMHEQFVERLCDERSEDYWIINKIPLVEYSNNDHFAFFS 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00947 914 FunFam Probable disease resistance protein At1g63360 409 501 - -
Viun6g00947 914 Gene3D Ribonuclease Inhibitor 558 653 IPR032675 -
Viun6g00947 914 PANTHER DISEASE RESISTANCE PROTEIN RP 61 849 IPR044974 GO:0006952
Viun6g00947 914 SMART AAA_5 177 346 IPR003593 GO:0016887
Viun6g00947 914 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 145 423 IPR027417 -
Viun6g00947 914 CDD RX-CC_like 21 125 IPR038005 -
Viun6g00947 914 Gene3D - 137 318 IPR027417 -
Viun6g00947 914 Gene3D Ribonuclease Inhibitor 654 889 IPR032675 -
Viun6g00947 914 Pfam NB-ARC domain 163 391 IPR002182 GO:0043531
Viun6g00947 914 Gene3D - 410 502 IPR036388 -
Viun6g00947 914 Pfam Rx N-terminal domain 9 100 IPR041118 -
Viun6g00947 914 SUPERFAMILY L domain-like 527 887 - -
Viun6g00947 914 PRINTS Disease resistance protein signature 618 634 - -
Viun6g00947 914 PRINTS Disease resistance protein signature 180 195 - -
Viun6g00947 914 PRINTS Disease resistance protein signature 358 372 - -
Viun6g00947 914 PRINTS Disease resistance protein signature 268 282 - -
Viun6g00947 914 Gene3D - 326 409 IPR042197 -
Viun6g00947 914 Gene3D - 9 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00947 Viun-Chr6 19114473 19121728 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00947 573 874 Receptor kinase-like Gene Family AT3G47580 25.079 8.34e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00947 K13457 - gmx:100782327 896.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g00947 6 19114473 19121728 Viun6g00947 6 19114473 19121728 ECH