Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00916 ATGGCCAAGCTTGCCCCTCTTGAAGAGCCTCTTTTGGATGGTGACTCTAGTGCCATTAACAATTCTGATCCTATTAAGACTAGAGGAAATGAAAATTTGACCCGATATTCAAATGCTGGATTTTTCAGTGTTCTTTCTTTTTCATGGATCACTCCATTAATAACACTAGGAAATGAGAAGACTTTAAACCATGAGGACCTCCCACTTCTTGCTACTGGTGACAGTGCCTATGGGGTTTTTCCAACTTTTAGAAGCAAAGTCGAGTCAGAGTTTGGTAGTGTTAGGAATGTGACCACTCTTAAGCTGGCCAAGGTTTTATTCTTGTCGACATGGCAAGGGATCTTTTTATCAGGTTTATTTGCATTCCTGTACGCGTGTGCTTCTTATGTTGGACCCTTTCTTATTGATATCCTTGTTCAATACCTCAATGGAGAATACATGATTAAAAATGAAGGCTATGTTTTGGCTGCGACTTTTGTTGCTGCAAAGCTTGTGGAGTGTCTTTCACAGAGGCACTGGATGTTTAGGTTCCAGCAGGTTGGGGTTAGAATGCAATCCATGTTGGTGGCAATGATCTATGCTAAAGGTTTGACTCTTTCTTGTCAATCAAAGGAGGTTCGTAGTACTGGGGAAATCATCAACTTAATGACTGTCGATGCTGAGAGAATTGGTGAATTCTGTTGGTACATGCATGATCCATGGATGTGTGTTTTGCAGCTTGCTTTGGCCCTGGTAATTCTCTATAGAAGTGTTGGTGTTGCTTCAATAGCTGCTCTTGCTGCCACTGTAATTGTGATGTTGCTAAACCATCCTGTGGCATCATTGCAAGAAAAGTTCCAAGGCAAGATAATGGAGTTCAAAGATAAAAGAATGAAGGCTACATCTGAGATCCTTAAGAATATGAGGATTCTAAAACTGCAAGCATGGGAGATGAAGTTCTTGTCAAAGATTATTCAGATTAGAAAGAGTGAGGAGACGTGGCTAAAGAAATTTCTTGCTGGTACTGCAACTATTCGATTCATCTTCCACAACGCCCCAACTTTTATTGCAGTTGTTACGTTTGGTGCTTGTATTTTTGTGGGGATACCACTTGAATCAGGGAAGGTGTTGTCAGCACTTGCAACATTCAGAATTCTTCAAATGCCCATCTACAGTCTTCCTGACACAATTTCTATGATTGCACAAACTAAAGTTTCTTTGGATAGGATTGCATCATTTCTTCGACTAGAGGAGTTGCAGACTGATATAGTACAGAAGCTTCCATGGGGAAGTTCTGATAAAGCAATTGATTTAGTGGATGGAAACTTCTCATGGGATTTATCTTCTCCTAATCCAACATTGAAAAACATAAATCTCAATGTTTTTCATGGCATGAGAGTAGCTGTATGTGGTACTGTTGGATCAGGCAAGTCTAGTTTACTTTCTTGTATCATTGGGGAAGTACCAAAGATATCTGGGACATTGAAAATATGTGGAACAAAGGCTTATGTTTCTCAATCACCATGGATTCAGAGTGGCAAGATAGAAGACAACATATTATTCGGTAAAGAGATGGACAGTGAGAAGTATGAGAAGGTGCTAGAGGCATGTTCCTTGACAAAGGACCTTGAGATTCTACCATTTGGTGATCAAACAATTATTGGGGAGAAGGGAATCAATTTGAGTGGTGGACAAAAGCAAAGAGTGCAAATAGCCCGTGCAATATACCAAGATGCTGATATATATCTTTTTGATGATCCCTTCAGTGCCGTTGATGCTCATACAGGATCTCATCTCTTTAAGGAGTGCTTGCTTGGCCTTTTAAAATCAAAAACTGTGATATACGTAACACATCAAGTAGAGTTCTTACCTGATGCTGATCTAATATTGGTCATGAGAGAAGGAAGGATAACTCAATCAGGAAAATACAATGACATTCTCAAGACAGGCACTGATTTTATGGAACTTGTAGGGGCACACACAGCAGCTTTGTCTTCAATTAAGTCCTTAGAGAGAAGACCAACATTTAAAACATCAAGTACCACCGAAGAGAAAACAAATTCGTTAAGTGATTTTGAACTTGAGAAAAATGTGGAAAACATACATGGTGAAAATGATAAGCGAAACGACACTGATGAGCCCAAAGGACAACTTGTTCAAGAAGAAGAACGAGAAAAGGGGAGAGTTGGATTTAGAGTGTTCTGGAAATACATCACAACAGCTTATGGAGGAGCTCTTGTGCCCTTCATATTACTTTCGCAGATACTCACTGTGGGTTTTCAGATTGCAAGCAATTATTGGATGACTGTAGCAACTCCTGTTTCAGCAACAGCAGAAACTGATATTGGAAGCTTTACACTCCTGGTTGTCTATGTTGCTTTGGCAATTGGAAGTTCCATTTTCACCTTTGCTAGATCATTTCTTGCTGTGATAGCTGGATACAAGACAGCCACTGTGCTCTTCGATAAAATGCATTTCTGTATTTTTCGAGCACCAATATCATTTTTTGATTCCACCCCAAGTGGTCGAATCCTCAACAGAGCTTCAATAGACCAAAGCTCACTAGATATGTACATTGCAAATATATTATGGGGAATTACTCTCAATCTGGTTCAACTATTGGGAAATGTTATTGTGATGTCTCAAGCTGCATGGCAGGTGTTCATAGTATTGATTCCTGTCATGGCAGCTAGCATATGGTACCAGCGGTACTACTCGGCATCTGCAAGAGAATTGGCACGATTGGTTGGTACATGTCAAGCTCCAGTTATACAACATTTTTCTGAAACAATTTCTGGATCAACAACCATAAGAAGTTTTGAACAAGAATCAAGATTTAATGACATAAATATGAAGTTGATAGACAGATATTCCCAACCCAAACTATACAGTGCTACTGCAATTGAATGGTTGAATTTCCGATTGGATATTTTATCCACTGTCATATTTGCCTTCTGTTTGGTATTCTTGGTATCTTTCCCAAATTCAATGACTGCTCCTGGCATTGCGGGATTGGCTGTGACATATGGACTTAATCTAAATACTGTGCAAACTAAAGTAATCTGGTTTCTTTGCGACTTGGAGAAAAAAATTATATCTGTTGAAAGAATACTCCAGTACACATCCCTCCCAAGTGAAGCTCCTCTTGTGATTAAAGATAACCAACCGGATTGTTCTTGGCCATCATTTGGAGAGGTTCATATCCAGGATTTACAGGTTCGATATGCTCCTCACTTGCCTATTGTTTTACGAGGTCTTACTTGCACTTTTACTGCTGGATCAAAAACTGGTATTGTGGGAAGAACAGGAAGTGGAAAATCAACTCTTGTGCAAACACTTCTCCGACTTATTGAACCTATGGATGGAAAAATATTAATAGATAACATTAACATATCTTTGATTGGAATTCATGATTTGCGGTCTAGACTCAGCATTATTCCTCAAGATCCAACGATGTTTGAAGGGACTGTAAGAACCAACTTGGATCCATTGGAAGAGTACACAGATGAACAGATTTGGGAGGCTCTAGATATGTGCCAACTGGGAGATGATGTAAGGAAAAAAGAAGGGAAGCTGGACTCCATAGTGATTGAGAATGGAGAAAATTGGAGCATGGGTCAAAGGCAGTTGGTCTGCCTAGGCCGTGTTCTACTGAAGAAAAGCAAGATCTTGGTGCTTGATGAAGCTACAGCATCAGTTGATACAGCCACAGATAATATTATTCAGCAAATAGTTAAGCAACATTTTTCAGAATGCACAGTCATTACCATTGCTCATAGGATAACTTCTATCATCGACAGTGACATGGTTCTATTTTTAAATCAAGGGTTGATAGAAGAATATGATTCACCTAAGAAACTTCTTAAGAACAAATCTTCATCTCTAGCTCAACTAGTGGCAGAATACACAAAGAGGTCAAACTCTGGTTTCGGAAATTAA 3918 0.3936 MAKLAPLEEPLLDGDSSAINNSDPIKTRGNENLTRYSNAGFFSVLSFSWITPLITLGNEKTLNHEDLPLLATGDSAYGVFPTFRSKVESEFGSVRNVTTLKLAKVLFLSTWQGIFLSGLFAFLYACASYVGPFLIDILVQYLNGEYMIKNEGYVLAATFVAAKLVECLSQRHWMFRFQQVGVRMQSMLVAMIYAKGLTLSCQSKEVRSTGEIINLMTVDAERIGEFCWYMHDPWMCVLQLALALVILYRSVGVASIAALAATVIVMLLNHPVASLQEKFQGKIMEFKDKRMKATSEILKNMRILKLQAWEMKFLSKIIQIRKSEETWLKKFLAGTATIRFIFHNAPTFIAVVTFGACIFVGIPLESGKVLSALATFRILQMPIYSLPDTISMIAQTKVSLDRIASFLRLEELQTDIVQKLPWGSSDKAIDLVDGNFSWDLSSPNPTLKNINLNVFHGMRVAVCGTVGSGKSSLLSCIIGEVPKISGTLKICGTKAYVSQSPWIQSGKIEDNILFGKEMDSEKYEKVLEACSLTKDLEILPFGDQTIIGEKGINLSGGQKQRVQIARAIYQDADIYLFDDPFSAVDAHTGSHLFKECLLGLLKSKTVIYVTHQVEFLPDADLILVMREGRITQSGKYNDILKTGTDFMELVGAHTAALSSIKSLERRPTFKTSSTTEEKTNSLSDFELEKNVENIHGENDKRNDTDEPKGQLVQEEEREKGRVGFRVFWKYITTAYGGALVPFILLSQILTVGFQIASNYWMTVATPVSATAETDIGSFTLLVVYVALAIGSSIFTFARSFLAVIAGYKTATVLFDKMHFCIFRAPISFFDSTPSGRILNRASIDQSSLDMYIANILWGITLNLVQLLGNVIVMSQAAWQVFIVLIPVMAASIWYQRYYSASARELARLVGTCQAPVIQHFSETISGSTTIRSFEQESRFNDINMKLIDRYSQPKLYSATAIEWLNFRLDILSTVIFAFCLVFLVSFPNSMTAPGIAGLAVTYGLNLNTVQTKVIWFLCDLEKKIISVERILQYTSLPSEAPLVIKDNQPDCSWPSFGEVHIQDLQVRYAPHLPIVLRGLTCTFTAGSKTGIVGRTGSGKSTLVQTLLRLIEPMDGKILIDNINISLIGIHDLRSRLSIIPQDPTMFEGTVRTNLDPLEEYTDEQIWEALDMCQLGDDVRKKEGKLDSIVIENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNIIQQIVKQHFSECTVITIAHRITSIIDSDMVLFLNQGLIEEYDSPKKLLKNKSSSLAQLVAEYTKRSNSGFGN 1305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00916 1305 CDD ABCC_MRP_domain1 429 629 - -
Viun6g00916 1305 CDD ABC_6TM_ABCC_D1 116 403 IPR044746 GO:0140359
Viun6g00916 1305 SUPERFAMILY ABC transporter transmembrane region 111 411 IPR036640 GO:0005524|GO:0016020
Viun6g00916 1305 Gene3D - 1042 1295 IPR027417 -
Viun6g00916 1305 FunFam ABC transporter C family member 3 1042 1294 - -
Viun6g00916 1305 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 429 652 IPR003439 GO:0005524
Viun6g00916 1305 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 37 1295 - -
Viun6g00916 1305 Pfam ABC transporter 1077 1224 IPR003439 GO:0005524
Viun6g00916 1305 FunFam ABC transporter C family member 5 703 1040 - -
Viun6g00916 1305 MobiDBLite consensus disorder prediction 693 715 - -
Viun6g00916 1305 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 742 1022 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun6g00916 1305 CDD ABCC_MRP_domain2 1057 1277 - -
Viun6g00916 1305 FunFam ABC transporter C family member 10 98 411 - -
Viun6g00916 1305 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1051 1285 IPR027417 -
Viun6g00916 1305 CDD ABC_6TM_ABCC_D2 740 1034 IPR044726 GO:0140359
Viun6g00916 1305 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1059 1293 IPR003439 GO:0005524
Viun6g00916 1305 Gene3D - 411 672 IPR027417 -
Viun6g00916 1305 Gene3D ABC transporter type 1, transmembrane domain 92 410 IPR036640 GO:0005524|GO:0016020
Viun6g00916 1305 Gene3D ABC transporter type 1, transmembrane domain 702 1040 IPR036640 GO:0005524|GO:0016020
Viun6g00916 1305 SUPERFAMILY ABC transporter transmembrane region 738 1041 IPR036640 GO:0005524|GO:0016020
Viun6g00916 1305 FunFam ABC transporter C family member 5 414 661 - -
Viun6g00916 1305 Pfam ABC transporter transmembrane region 114 382 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun6g00916 1305 Pfam ABC transporter transmembrane region 742 985 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun6g00916 1305 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 115 395 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun6g00916 1305 SMART AAA_5 456 629 IPR003593 GO:0016887
Viun6g00916 1305 SMART AAA_5 1085 1270 IPR003593 GO:0016887
Viun6g00916 1305 Pfam ABC transporter 447 581 IPR003439 GO:0005524
Viun6g00916 1305 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 426 651 IPR027417 -
Viun6g00916 1305 ProSitePatterns ABC transporters family signature. 554 568 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00916 Viun-Chr6 18838204 18844027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00916 429 867 Calmodulin-binding Proteins AT2G36910 24.335 3.37e-25 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00916 - K05666 gmx:106794105 2259.18