Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00915 ATGGCCAAGCTTGCCCCTCTTGAAGAGCCTCTTTTGGATGGTGACTCTAGTGCCATTAACAATTCTGATCCTATTAAGACTAGAGGAAATGAAAATTTGACCCGATATTCAAATGCTGGATTTTTCAGTGTTCTTTCTTTTTCATGGATCACTCCATTAATAACACTAGGAAATGAGAAGACTTTAAACCATGAGGACCTCCCACTTCTTGCTACTGGTGACAGTGCCTATGGGGTTTTTCCAACTTTTAGAAGCAAAGTCGAGTCAGAGTTTGGTAGTGTTAGGAATGTGACCACTCTTAAGCTGGCCAAGGTTTTATTCTTGTCGACATGGCAAGGGATCTTTTTATCAGGTTTATTTGCATTCCTGTACGCGTGTGCTTCTTATGTTGGACCCTTTCTTATTGATATCCTTGTTCAATACCTCAATGGAGAATACATGATTAAAAATGAAGGCTATGTTTTGGCTGCGACTTTTGTTGCTGCAAAGCTTGTGGAGTGTCTTTCACAGAGGCACTGGATGTTTAGGTTCCAGCAGGTTGGGGTTAGAATGCAATCCATGTTGGTGGCAATGATCTATGCTAAAGGTTTGACTCTTTCTTGTCAATCAAAGGAGGTTCGTAGTACTGGGGAAATCATCAACTTAATGACTGTCGATGCTGAGAGAATTGGTGAATTCTGTTGGTACATGCATGATCCATGGATGTGTGTTTTGCAGCTTGCTTTGGCCCTGGTAATTCTCTATAGAAGTGTTGGTGTTGCTTCAATAGCTGCTCTTGCTGCCACTGTAATTGTGATGTTGCTAAACCATCCTGTGGCATCATTGCAAGAAAAGTTCCAAGGCAAGATAATGGAGTTCAAAGATAAAAGAATGAAGGCTACATCTGAGATCCTTAAGAATATGAGGATTCTAAAACTGCAAGCATGGGAGATGAAGTTCTTGTCAAAGATTATTCAGATTAGAAAGAGTGAGGAGACGTGGCTAAAGAAATTTCTTGCTGGTACTGCAACTATTCGATTCATCTTCCACAACGCCCCAACTTTTATTGCAGTTGTTACGTTTGGTGCTTGTATTTTTGTGGGGATACCACTTGAATCAGGGAAGGTGTTGTCAGCACTTGCAACATTCAGAATTCTTCAAATGCCCATCTACAGTCTTCCTGACACAATTTCTATGATTGCACAAACTAAAGTTTCTTTGGATAGGATTGCATCATTTCTTCGACTAGAGGAGTTGCAGACTGATATAGTACAGAAGCTTCCATGGGGAAGTTCTGATAAAGCAATTGATTTAGTGGATGGAAACTTCTCATGGGATTTATCTTCTCCTAATCCAACATTGAAAAACATAAATCTCAATGTTTTTCATGGCATGAGAGTAGCTGTATGTGGTACTGTTGGATCAGGCAAGTCTAGTTTACTTTCTTGTATCATTGGGGAAGTACCAAAGATATCTGGGACATTGAAAATATGTGGAACAAAGGCTTATGTTTCTCAATCACCATGGATTCAGAGTGGCAAGATAGAAGACAACATATTATTCGGTAAAGAGATGGACAGTGAGAAGTATGAGAAGGTGCTAGAGGCATGTTCCTTGACAAAGGACCTTGAGATTCTACCATTTGGTGATCAAACAATTATTGGGGAGAAGGGAATCAATTTGAGTGGTGGACAAAAGCAAAGAGTGCAAATAGCCCGTGCAATATACCAAGATGCTGATATATATCTTTTTGATGATCCCTTCAGTGCCGTTGATGCTCATACAGGATCTCATCTCTTTAAGGAGTGCTTGCTTGGCCTTTTAAAATCAAAAACTGTGATATACGTAACACATCAAGTAGAGTTCTTACCTGATGCTGATCTAATATTGGTCATGAGAGAAGGAAGGATAACTCAATCAGGAAAATACAATGACATTCTCAAGACAGGCACTGATTTTATGGAACTTGTAGGGGCACACACAGCAGCTTTGTCTTCAATTAAGTCCTTAGAGAGAAGACCAACATTTAAAACATCAAGTACCACCGAAGAGAAAACAAATTCGTTAAGTGATTTTGAACTTGAGAAAAATGTGGAAAACATACATGGTGAAAATGATAAGCGAAACGACACTGATGAGCCCAAAGGACAACTTGTTCAAGAAGAAGAACGAGAAAAGGGGAGAGTTGGATTTAGAGTGTTCTGGAAATACATCACAACAGCTTATGGAGGAGCTCTTGTGCCCTTCATATTACTTTCGCAGATACTCACTGTGGGTTTTCAGATTGCAAGCAATTATTGGATGACTGTAGCAACTCCTGTTTCAGCAACAGCAGAAACTGATATTGGAAGCTTTACACTCCTGGTTGTCTATGTTGCTTTGGCAATTGGAAGTTCCATTTTCACCTTTGCTAGATCATTTCTTGCTGTGATAGCTGGATACAAGACAGCCACTGTGCTCTTCGATAAAATGCATTTCTGTATTTTTCGAGCACCAATATCATTTTTTGATTCCACCCCAAGTGGTCGAATCCTCAACAGAGTATGTCGGTATTCGTTGATATTCTTCATTGGTTTAATTTGA 2562 0.397 MAKLAPLEEPLLDGDSSAINNSDPIKTRGNENLTRYSNAGFFSVLSFSWITPLITLGNEKTLNHEDLPLLATGDSAYGVFPTFRSKVESEFGSVRNVTTLKLAKVLFLSTWQGIFLSGLFAFLYACASYVGPFLIDILVQYLNGEYMIKNEGYVLAATFVAAKLVECLSQRHWMFRFQQVGVRMQSMLVAMIYAKGLTLSCQSKEVRSTGEIINLMTVDAERIGEFCWYMHDPWMCVLQLALALVILYRSVGVASIAALAATVIVMLLNHPVASLQEKFQGKIMEFKDKRMKATSEILKNMRILKLQAWEMKFLSKIIQIRKSEETWLKKFLAGTATIRFIFHNAPTFIAVVTFGACIFVGIPLESGKVLSALATFRILQMPIYSLPDTISMIAQTKVSLDRIASFLRLEELQTDIVQKLPWGSSDKAIDLVDGNFSWDLSSPNPTLKNINLNVFHGMRVAVCGTVGSGKSSLLSCIIGEVPKISGTLKICGTKAYVSQSPWIQSGKIEDNILFGKEMDSEKYEKVLEACSLTKDLEILPFGDQTIIGEKGINLSGGQKQRVQIARAIYQDADIYLFDDPFSAVDAHTGSHLFKECLLGLLKSKTVIYVTHQVEFLPDADLILVMREGRITQSGKYNDILKTGTDFMELVGAHTAALSSIKSLERRPTFKTSSTTEEKTNSLSDFELEKNVENIHGENDKRNDTDEPKGQLVQEEEREKGRVGFRVFWKYITTAYGGALVPFILLSQILTVGFQIASNYWMTVATPVSATAETDIGSFTLLVVYVALAIGSSIFTFARSFLAVIAGYKTATVLFDKMHFCIFRAPISFFDSTPSGRILNRVCRYSLIFFIGLI 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00915 853 SMART AAA_5 456 629 IPR003593 GO:0016887
Viun6g00915 853 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 37 841 - -
Viun6g00915 853 SUPERFAMILY ABC transporter transmembrane region 738 841 IPR036640 GO:0005524|GO:0016020
Viun6g00915 853 CDD ABCC_MRP_domain1 429 629 - -
Viun6g00915 853 CDD ABC_6TM_ABCC_D1 116 403 IPR044746 GO:0140359
Viun6g00915 853 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 742 841 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun6g00915 853 Pfam ABC transporter transmembrane region 742 842 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun6g00915 853 Pfam ABC transporter transmembrane region 114 382 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun6g00915 853 Gene3D - 411 673 IPR027417 -
Viun6g00915 853 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 429 652 IPR003439 GO:0005524
Viun6g00915 853 FunFam ABC transporter C family member 10 98 411 - -
Viun6g00915 853 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 426 651 IPR027417 -
Viun6g00915 853 FunFam ABC transporter C family member 5 414 661 - -
Viun6g00915 853 SUPERFAMILY ABC transporter transmembrane region 111 411 IPR036640 GO:0005524|GO:0016020
Viun6g00915 853 MobiDBLite consensus disorder prediction 693 715 - -
Viun6g00915 853 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 115 395 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun6g00915 853 Pfam ABC transporter 447 581 IPR003439 GO:0005524
Viun6g00915 853 ProSitePatterns ABC transporters family signature. 554 568 IPR017871 GO:0005524|GO:0016887
Viun6g00915 853 Gene3D ABC transporter type 1, transmembrane domain 702 845 IPR036640 GO:0005524|GO:0016020
Viun6g00915 853 Gene3D ABC transporter type 1, transmembrane domain 92 410 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00915 Viun-Chr6 18838192 18841737 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00915 429 675 Calmodulin-binding Proteins AT2G36910 28.464 1.06e-25 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00915 - K05666 gmx:106794105 1428.31