Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00912 ATGGACCCTGCTGATTGGGATCAAGAACTGAGAAATTATCAGGATGTAATAGCTTCAGGCACCAAGAGTAAGAAAATAAAGGCCATGGTGATGCTGGCGCGTTTTTCTAAGCAGGCCCCTGAGCGTGTTTTAGCTCGCACCATACCCATTCTCACTGAGATTCTTGGTCACAATGTTTCAAATGACTCTGCTCCTACACTTCAAGAGGCTGCTGCGTATTGCTTGAAGTGCATTGCTTGCAGGGGTGAGGGTGCGTTGGCCGTTGAAATTGGTGCACACGATGCCCCTCGTTCTTTGATGAGGTTGTTGCCTCACTCTGATGGAAGGATGCAGAAGGTCCTGATAAAATGTTTGATGGTTATTGTTAGTTATTGCAATGCAAGTAGGCTAGTTGTTGCCACCAACGGTGGGGTGGAAATGATCATTGGTTTGTTGAGTTCTTGCACCGATGATACCAGGAGGTATTTGTTGGAGATTTTGAGTGCGTTATCAATGAGAAGGGATGTTAGGAAGGCTCTGACTAGACTAAGAGCTCTACATTATGTTGTGGAGGCTGCCTGTTGTGGGAGCATGGTGTCTAGGGAAAGGGCTTGTCAAGCAATTGGGTTGCTTGGAGTGACCAGACAGACTCGGCGTATGCTTGTTGAATTGGGAGCAATTCCAGTGCTGGTGTCGTTGTTTCGTGAGGGAGAACACTCTACAAAGCTTGTTGTTGGTAATTCTCTTGGTGTGATATCTGCTCATGTTGATTACATTAGGCCGGTTGCTCAAGCTGGGGCTATTCCCCTTTATGCTGAGCTTCTTGAAGGACCTGATCCTTCAGGGAAAGAGATAGCTGAGGATGTTTTTTGTATATTGGCTGTTGCTGAGGCTAATGCTGTTGAAATTTCTGGTCACTTGGTAAGGATTCTGAGAGAAGGTAATGATGAGGCAAAGGCTTCTGCTGCGGATGTGATGTGGGATCTGTCGGGTTACAAGCATTCAATGTGTGTAATACGAGATTCAGGAGCGTTTCCTGTTCTTGTTGAGCTGTTGGAGACTGGGAGTGAAGATGTGAAGGTGAGTGTTTCTGGGGCATTTGCTCAACTGAGCTATGATGGAACTGATAGAATGTCACTTGCTGAGGCAGGGGCGATTCCGATTCTCATAGACTTGATGAATGATGTTGATGAGGTTGAGGATCTAAGGGATAATGCTACTGAGGCTCTTGTGAATTTTTATGAAGATCCATTGTATCATGATAGAGTGTCGGATGCAATTAATGTTTCTTCCTTCAGAAATATGCAGAATAGGTTAGTTCATATTCGGGCATCCAATGAGCACATGGCTAGATCCTTGAGAAGAATGAGTGTTGAGCAGCTCACATGGAACCCAGATCTTGTGTAA 1386 0.4531 MDPADWDQELRNYQDVIASGTKSKKIKAMVMLARFSKQAPERVLARTIPILTEILGHNVSNDSAPTLQEAAAYCLKCIACRGEGALAVEIGAHDAPRSLMRLLPHSDGRMQKVLIKCLMVIVSYCNASRLVVATNGGVEMIIGLLSSCTDDTRRYLLEILSALSMRRDVRKALTRLRALHYVVEAACCGSMVSRERACQAIGLLGVTRQTRRMLVELGAIPVLVSLFREGEHSTKLVVGNSLGVISAHVDYIRPVAQAGAIPLYAELLEGPDPSGKEIAEDVFCILAVAEANAVEISGHLVRILREGNDEAKASAADVMWDLSGYKHSMCVIRDSGAFPVLVELLETGSEDVKVSVSGAFAQLSYDGTDRMSLAEAGAIPILIDLMNDVDEVEDLRDNATEALVNFYEDPLYHDRVSDAINVSSFRNMQNRLVHIRASNEHMARSLRRMSVEQLTWNPDLV 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00912 461 SUPERFAMILY ARM repeat 47 407 IPR016024 -
Viun6g00912 461 Gene3D - 249 421 IPR011989 -
Viun6g00912 461 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 377 406 IPR000225 GO:0005515
Viun6g00912 461 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 300 418 - -
Viun6g00912 461 SMART arm_5 35 80 IPR000225 GO:0005515
Viun6g00912 461 SMART arm_5 207 247 IPR000225 GO:0005515
Viun6g00912 461 SMART arm_5 248 288 IPR000225 GO:0005515
Viun6g00912 461 SMART arm_5 366 408 IPR000225 GO:0005515
Viun6g00912 461 SMART arm_5 125 165 IPR000225 GO:0005515
Viun6g00912 461 SMART arm_5 325 365 IPR000225 GO:0005515
Viun6g00912 461 Gene3D - 6 248 IPR011989 -
Viun6g00912 461 Coils Coil 382 402 - -
Viun6g00912 461 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 336 378 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00912 Viun-Chr6 18813049 18815193 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00912 210 406 U-box Gene Family AT3G46510 27.700 9.68e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00912 - - gmx:100819735 796.578