Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00907 ATGCAAACATCTCAGAATCATAAAATTTCTTATGGCCCTGGTGGGTTTTATGTTGAGCCCGTGCAAAATTTGGAGTCATATTGCTTACCATCAAGCGAGAACATAGACAATTACTCTTCCTCTGATAACAGCAGCCAAACAACCTACCCTTCTGTCCAAACCTTAGAGCAATATTGCACCCTTGAATCTGCTTCCACAAGCAACAGTTTCCCTTGCCAAAATTCTCCACCTGCTCTCAGTTTCTCATCAAACAATAGTCCGTTGTCAAAGCTAGAGTCAAATTCATATGTGCTAAGGCCACAGCATTCTCTTGAAATTGCCAGTGGCCCACTAGAGAATGATCCTTACCCAACTCTTGACCTTGATGACCTGTCCCATAAGATAAGAGAATTGGAAACTGCTATGCTGGGACCTAATGCAGAAATGCTAGATATCTATGGTGCTCTAATGCCAGGAGAAGCTGATTCAATTTTGTTAGAGGCTGAGAAGTGGAAGAAAATGATGGAGATGGTATCTAGAGGGGATTTGAAAGAGATGCTTTATACTTGTGCTAAGGCAATGGCTGTGAATGATATGGAGACAACTGAATGGATGATGTCAGAGTCGCGTAAGATGGTTTCGGTTTCCGGCAATCCGATTCAGCGGTTGGGAGCATACATTGTGGAGTCTCTTGTAGCAAGGATGGCTGCTTCAGGAAGCACAATCTATAAATCCTTGAAATGTAGTGAGCCTACTGGTAATGAGCTACTTTCATACATGCATGTACTCTATGAAGTTTGTCCATATTTCAAGTTTGGATACATGTCAGCAAATGGAGCAATTGCTGAAGCTCTGAAGGAGGAAAGTGAAGTTCATATAATAGACTTTCAGATTTCTCAGGGAACTCAATGGGTGAGCCTGATTCAGGCTCTTGCACGCCGCCCCGGAGGGCCACCAAAGATCAGAATATCAGGTGTTGATGACTCCTTTTCATCTTATGCCCGGGGAGGAGGACTTGATATTGTTGGGAAAAGGTTATCAGCACTTGCAGAGTCATGCAATGTACCCTTTGAGTTCAATGCTGTGAGAGTACCTGCTTCTCAAGTGCAACTTAAAGACCTTGAACTTCGCCCTTATGAAGCTGTGGCTGTGAACTTTGCCATTATGTTGCACCATGTGCCTGATGCAAGTGTTAACGGCCACAATCATCGTGATAGGTTGTTGAGATTAGCCAAGCACTTGTCTCCTAAGGTGGTGACTCTTGTGGAGCAAGAATTTAACACCAACAATGCGCCGTTCTTGCAGCGATTCGTTGAGACGATGAACTACTACTTTGCTGTTTTTGATTCAATTGATGCTGCTCTTCCAAGGGAGCACAAAGAGAGGATTAATGTGGAGCAGCACTGTTTGGCTCGTGAAGTTGTCAACTTAATAGCATGTGAAGGAGAAGAAAGAGTTGAACGTCATGAGCTTCTGAATAAGTGGAGAATGCGTTTCACAGATGCTGGATTTTCACCTTACCCTCTGAACTCCGTTATTAATTCTTCAATCAAAGATCTTCTCCAGAGCTACCATGGTCACTACACTCTAGAAGAGAAAGATGGTGCACTTTTTCTTGGTTGGAAGAATCAAGCTCTAATTGCCTCTTGTGCTTGGAGATGA 1641 0.4333 MQTSQNHKISYGPGGFYVEPVQNLESYCLPSSENIDNYSSSDNSSQTTYPSVQTLEQYCTLESASTSNSFPCQNSPPALSFSSNNSPLSKLESNSYVLRPQHSLEIASGPLENDPYPTLDLDDLSHKIRELETAMLGPNAEMLDIYGALMPGEADSILLEAEKWKKMMEMVSRGDLKEMLYTCAKAMAVNDMETTEWMMSESRKMVSVSGNPIQRLGAYIVESLVARMAASGSTIYKSLKCSEPTGNELLSYMHVLYEVCPYFKFGYMSANGAIAEALKEESEVHIIDFQISQGTQWVSLIQALARRPGGPPKIRISGVDDSFSSYARGGGLDIVGKRLSALAESCNVPFEFNAVRVPASQVQLKDLELRPYEAVAVNFAIMLHHVPDASVNGHNHRDRLLRLAKHLSPKVVTLVEQEFNTNNAPFLQRFVETMNYYFAVFDSIDAALPREHKERINVEQHCLAREVVNLIACEGEERVERHELLNKWRMRFTDAGFSPYPLNSVINSSIKDLLQSYHGHYTLEEKDGALFLGWKNQALIASCAWR 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00907 546 Pfam GRAS domain family 176 546 IPR005202 -
Viun6g00907 546 ProSiteProfiles GRAS family profile. 167 546 IPR005202 -
Viun6g00907 546 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 130 541 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00907 Viun-Chr6 18768734 18771968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00907 1 546 GRAS Transcription Factor Family AT1G50600 55.797 0.0 597
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Viun6g00907 GRAS 4.7e-130 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00907 - - gmx:100785400 964.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g00907 6 18768734 18771968 Viun8g02934 8 37001307 37004332 PCT