Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00901 ATGGACGCCGCCGAAGCTCTCTCCGACGATCCAAATCGACCTGGGTCGAGGCCCAATTCCGCCGCCGACGCTGCTCCCGCCGGAGGCGGTGCAAGGTACAAGCTCATGTCACCGGCGAAGCTCCCGATCTCACGCTCGCCGTGCGTCACGATTCCGCCGGGGCTCAGTCCGACTTCGTTTCTCGAGTCACCGGTGCTGCTCTCCAACATGAAGGTGGAACCTTCACCGACTACAGGATCCCTTTTTATGCTTCATCAAACAGCGCATGCTTCTGTGACTTCTGCTGCATCTGCTTCATTTCCTGTAACCACTGCAAGCTTCAATACCAATACTGTTGATGACCGGAAACCCAGCTTCTTTGAGTTTAAACCGCACAGTAGACCAAATATGGTTCCTGCAGACCCCGACAATCACGCAAGTGAAAAATCTACTCAAATAGATGGTGAAGGAAAAGCTCAACCTTTTGATTCATCATCACCATTAGTAAAAAGTGAGATAGCGGTCCCTTCAAATGAATTAAGTCTATCATCTCCTGTTCAAATTGTTAGCTCGGGAGCTAATGCCCGTGTTGAAGGTGATTTGGATGAACTGAACCCTAGGAGCAACATAGCAACTGGGCTTCAACCATCACAAGTTGACAATAGAGGTAGTGGACTTTCCGTCACAGCTGAGCGAGTATCTGATGATGGATACAACTGGAGAAAGTATGGGCAGAAACATGTTAAAGGAAGTGAATTTCCACGCAGTTATTACAAATGTACACATCCTAACTGTGAAGTTAAGAAACTATTTGAACGATCTCATGATGGGCAAATCACTGAGATAATTTACAAGGGGACACATGATCATCCGAAACCCCAGCCAAACCGGCGTTACTCAAGTGGAACTATCATGACTATGCAAGAAGAGAGGACTGATAAAGCTTCCTTTCGAGATGACAAAGGATCCAATATATGTGGCCAGGTGTCTCACCCAGCTGAGCCTGACAGTACTCCAGAGTTATCACCTGCAGCAACAAATGATGGTGATCCAGAGGGTACAGGATTTTTTTCAAATCGGAATAGTGATGAGGTTGATGATGATGATCCCTTATCAAAGCGAAGAAAAATGGAGTTTGCAAATGCTGACATTACTCCTGTAGTTAAGCCTATTAGGGAGCCACGGGTCGTTGTACAAACTCTGAGTGAGGTTGATATATTGGATGATGGTTACCGCTGGCGCAAGTATGGGCAAAAGGTGGTGAGAGGCAATCCTAACCCTAGAAGCTATTACAAATGCACAAACACGGGGTGCCCCGTTAGGAAACATGTGGAGAGGGCTTCTCATGATCCAAAAGCTGTGATAACCACATATGAGGGGAAACACAATCATGATGTGCCAACTGCAAGGAATAATAGCTGCCATGACATTGCAGGATCAGCAAGTGGTGGTGGACACACAAGAATTAGGGCAGAAGAAAGTGATACCATCAGCCTTGACCTTGGTATGGGAATCAGCCCTGCTTCGGAAAACACGCCAAACAGCCAAGGGAGAATGATGCTTCCTGAATTTGGGGACAACCATGCTCATACCAGCAACTCCAATTTCAAGTTTGTTCATACTTCAGGGGCACCTGTGTACTTTGGTGTTCTGAATAACAACTCTAACCCATATGGCTCTAGAGAAAATCCAAGTGATAGTAGTACATCTTTAAACCATTCTGCATATCCCTGCCCTCAGAACGTGGGAAGAATACTAATGGGTCCTTAA 1749 0.4643 MDAAEALSDDPNRPGSRPNSAADAAPAGGGARYKLMSPAKLPISRSPCVTIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLFMLHQTAHASVTSAASASFPVTTASFNTNTVDDRKPSFFEFKPHSRPNMVPADPDNHASEKSTQIDGEGKAQPFDSSSPLVKSEIAVPSNELSLSSPVQIVSSGANARVEGDLDELNPRSNIATGLQPSQVDNRGSGLSVTAERVSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPNRRYSSGTIMTMQEERTDKASFRDDKGSNICGQVSHPAEPDSTPELSPAATNDGDPEGTGFFSNRNSDEVDDDDPLSKRRKMEFANADITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNTGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARNNSCHDIAGSASGGGHTRIRAEESDTISLDLGMGISPASENTPNSQGRMMLPEFGDNHAHTSNSNFKFVHTSGAPVYFGVLNNNSNPYGSRENPSDSSTSLNHSAYPCPQNVGRILMGP 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00901 582 MobiDBLite consensus disorder prediction 550 570 - -
Viun6g00901 582 MobiDBLite consensus disorder prediction 305 367 - -
Viun6g00901 582 Pfam WRKY DNA -binding domain 401 457 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun6g00901 582 Pfam WRKY DNA -binding domain 228 284 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun6g00901 582 SUPERFAMILY WRKY DNA-binding domain 392 460 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun6g00901 582 Gene3D WRKY domain 385 461 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun6g00901 582 Gene3D WRKY domain 219 287 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun6g00901 582 MobiDBLite consensus disorder prediction 550 582 - -
Viun6g00901 582 MobiDBLite consensus disorder prediction 146 162 - -
Viun6g00901 582 ProSiteProfiles WRKY domain profile. 222 286 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun6g00901 582 SMART WRKY_cls 227 285 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun6g00901 582 SMART WRKY_cls 400 459 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun6g00901 582 FunFam WRKY transcription factor 217 287 - -
Viun6g00901 582 MobiDBLite consensus disorder prediction 277 296 - -
Viun6g00901 582 FunFam WRKY transcription factor 33 387 453 - -
Viun6g00901 582 MobiDBLite consensus disorder prediction 119 162 - -
Viun6g00901 582 SUPERFAMILY WRKY DNA-binding domain 224 286 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun6g00901 582 ProSiteProfiles WRKY domain profile. 395 460 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun6g00901 582 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 62 499 IPR044810 GO:0003700
Viun6g00901 582 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00901 Viun-Chr6 18761436 18767196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00901 36 582 WRKY Transcription Factor Family AT4G26640 56.295 0.0 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun6g00901 WRKY 1.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00901 - - gmx:100781491 987.638