Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00899 ATGATGCCAAGTGTTAAGCCTGATGCATCTGAGAGAGACTCAGAGCCATTTGTTGAAATTGATCCAACGGGAAGATATGGCAGATACAATGAACTGTTGGGATGTGGTGCTGTGAAAAAGGTGTACAGGGCATTTGATCAGGAAGAGGGGATAGAGGTGGCATGGAACCAAGTGAAACTGAGGAACTTCAGTGATGATCCTGCAATGGTGGAAAGGCTTTACTCTGAGGTGAGATTGCTCAGAAGCTTGACCAACAAAAACATCATATCCCTTTACAGTGTTTGGAGGGATGAGAAGCACAACACTCTGAACTTCATCACCGAGGTCTGCACCAGTGGGAATCTGAGGGAGTACAGAAAGAAACACAGGCATGTGTCCATGAGAGCCTTGAAAAAATGGTCCAAGCAGATTTTGGAAGGGTTGAATTACTTGCATGTTCATGACCCTTGTATCATCCACAGAGACCTCAACTGCAGCAATGTCTTTGTCAATGGGAACACTGGCCAGGTTAAGATTGGTGACTTGGGTTTGGCAGCAATTGTGGGGAAGAGCCACTCTGCACATTCAGTTCTTGGGACACCAGAATTCATGGCACCTGAGTTGTATGATGAAAACTACACTGAATTGGTTGACATATACTCATTTGGGATGTGTGTGTTGGAGATGGTAACACTAGAGATTCCTTACAGTGAATGTGACAATGTTGCTAAGATATACAAGAAGGTTTCATCAGGTGTGAGACCTCAAGCCCTGAGCAAGATCCAAGATCCTGAAGTGAAGACCTTCATTGAGAGGTGTCTTGCTCAACCAAGGGCTAGACCTTCTGCTGCAGAGTTGCTGAAGGACCCTTTCTTTAATTTGCTTGATTGTGATGAAGATGATGACTCTAATGCTTCATGA 900 0.4456 MMPSVKPDASERDSEPFVEIDPTGRYGRYNELLGCGAVKKVYRAFDQEEGIEVAWNQVKLRNFSDDPAMVERLYSEVRLLRSLTNKNIISLYSVWRDEKHNTLNFITEVCTSGNLREYRKKHRHVSMRALKKWSKQILEGLNYLHVHDPCIIHRDLNCSNVFVNGNTGQVKIGDLGLAAIVGKSHSAHSVLGTPEFMAPELYDENYTELVDIYSFGMCVLEMVTLEIPYSECDNVAKIYKKVSSGVRPQALSKIQDPEVKTFIERCLAQPRARPSAAELLKDPFFNLLDCDEDDDSNAS 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00899 299 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g00899 299 SUPERFAMILY Protein kinase-like (PK-like) 20 286 IPR011009 -
Viun6g00899 299 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g00899 299 Gene3D Phosphorylase Kinase; domain 1 10 108 - -
Viun6g00899 299 CDD STKc_WNK 25 285 - -
Viun6g00899 299 FunFam probable serine/threonine-protein kinase WNK9 110 290 - -
Viun6g00899 299 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 10 286 - -
Viun6g00899 299 FunFam Probable serine/threonine-protein kinase WNK1 11 108 - -
Viun6g00899 299 PIRSF TyrPK_CSF1-R 115 282 - -
Viun6g00899 299 PIRSF TyrPK_CSF1-R 28 129 - -
Viun6g00899 299 Gene3D Transferase(Phosphotransferase) domain 1 110 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00899 Viun-Chr6 18733137 18735279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00899 1 286 MAP Kinase Kinase Kinase AT5G55560 81.034 0.0 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Viun6g00899 Pkinase 1.1e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00899 K08867 - gmx:100818126 568.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g00899 6 18733137 18735279 Viun6g00899 6 18733137 18735279 ECH
Viun6g00899 6 18733137 18735279 Viun8g02926 8 36977648 36980164 PCT