Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00897 ATGGAATCGGATCTTGGCAAGCTCTTCATTGGGGGAATATCTTGGGACACTGATGAGGAACGGCTTAAGGAATATTTTGGGAAATATGGGGAGGTGATAGAGGCTGTGATCATGAGGGATCGCGTAACAGGTCGTGCTCGTGGCTTTGGTTTTGTTGTCTTTGCTGATCCTTCTGTTGCAGAAAGAGTAATCATGGATAAACACATAATTGATGGGCGAACAGTTGAAGCAAAGAAAGCTGTTCCTAGGGATGATCAACTTAATAGGCAGTCTGGCAGTGCACATGCTTCTCCTGGTCCTGGACGCACTAAAAAAATCTTTGTTGGAGGTTTACCATCAACCATCACTGAAAGTGATTTTAAGAAGTATTTTGATCAGTTTGGTACAATTACAGATGTTGTAGTTATGTATGATCATAATACCCAGAGGCCAAGAGGGTTTGGCTTCATTACCTATGATTCTGAGGAAGCTGTGGATAGAGTTCTCTATAAAACTTTTCATGAACTCAATGGTAAGATGGTTGAAGTCAAGAGGGCAGTTCCCAAAGAGCTTTCTCCGGGTCCCAGCCGTAGCCCATTGATAGGATATAACTATGGTTTGAATAGGGCCAGTAACTACTTAAACAGTTATGCTCAGGGTTATAGTATGAGTCCAATAGGAGGATATGGAGTGAGGATGGATGGTAGGTTTAGTCCTCTTACCGGTGGTAGAAGTGGATTTACTCCCTTTGGCAATACTGGTTATGGAATGGGAGTGAATTTGGATTCAGGATTGAGCCCAACCTTTGGAGGGACTTCCAATTATGGGAGCAATCTAGGATATGGTCGACTATTGAATCCTTTCTACAGTGGCAACTCTGGGAGATATACCACTCCTATAGGCTATAGTGGGGTTAATGGAAGAAGCGATACTGTTATGAACTCACCATCTCGTAATTTATGGGGAAATGGGGGCCTTAATAATGCCAATAATCCTGTCAGCCCCAACCCTTTCTTAGGATCTGGAAGTGGAGCTTTTGGTGTTTCCATTGGAAATAGTGGCACAGGCTGGGGTCCATCCATTCCAGCCCAGGGTGGAGGTGCTGCTTCTGGTTATGGTACTGGGAATAATGTTTATGAAGGTGGAGATAGCAGCTTTGGTCTAGGTGGAGCAGGGTATGGAAGAAACAGCAGTTCAGGTGTGACTCCAGCCTCTGCATTTAATGTGTCAACCGGTGGTTATGAAGGATCATACGGGGACTTGTACCGTACTGGCAGTGGTTCGGTTTACAACGACTCTGCTTGGCGTTCTGCTGTGTCTGAGATTGATGGTTCTGGTTCATTTGGTTATGGTCTTGGTGGTATAGCTTCAGATGATCCAGTAAAGAATTCTGAGGGTTATATTGGAAACTACAATGTTACTAGTAGACAACCTAATAGAGGAATCGCTGCCTAG 1434 0.4421 MESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRVTGRARGFGFVVFADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQLNRQSGSAHASPGPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPSRSPLIGYNYGLNRASNYLNSYAQGYSMSPIGGYGVRMDGRFSPLTGGRSGFTPFGNTGYGMGVNLDSGLSPTFGGTSNYGSNLGYGRLLNPFYSGNSGRYTTPIGYSGVNGRSDTVMNSPSRNLWGNGGLNNANNPVSPNPFLGSGSGAFGVSIGNSGTGWGPSIPAQGGGAASGYGTGNNVYEGGDSSFGLGGAGYGRNSSSGVTPASAFNVSTGGYEGSYGDLYRTGSGSVYNDSAWRSAVSEIDGSGSFGYGLGGIASDDPVKNSEGYIGNYNVTSRQPNRGIAA 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00897 477 CDD RRM2_Hrp1p 105 182 - -
Viun6g00897 477 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Viun6g00897 477 FunFam Heterogeneous nuclear ribonucleoprotein 1 101 188 - -
Viun6g00897 477 SUPERFAMILY RNA-binding domain, RBD 103 191 IPR035979 GO:0003676
Viun6g00897 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 181 IPR000504 GO:0003723
Viun6g00897 477 Gene3D - 6 87 IPR012677 -
Viun6g00897 477 SMART rrm1_1 7 78 IPR000504 GO:0003723
Viun6g00897 477 SMART rrm1_1 105 177 IPR000504 GO:0003723
Viun6g00897 477 Gene3D - 103 183 IPR012677 -
Viun6g00897 477 MobiDBLite consensus disorder prediction 80 104 - -
Viun6g00897 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Viun6g00897 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Viun6g00897 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 164 IPR000504 GO:0003723
Viun6g00897 477 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Viun6g00897 477 SUPERFAMILY RNA-binding domain, RBD 4 101 IPR035979 GO:0003676
Viun6g00897 477 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00897 Viun-Chr6 18690040 18694263 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00897 2 183 Eukaryotic Initiation Factors Gene Family AT2G36660 30.412 3.72e-17 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00897 K14411 - gmx:100805131 892.493