Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00887 ATGGCTAAGCTTTCCCCTCTTGAAGAGACCCTTCTAAACGGTGACTCCAGTGCAAGCAGCAAGACAAAAGGAAAGGAAAATTTAACCCGAAATTCAAATGCTGGATTTTTCAATACTCTCACTTTCTCGTGGATCACTCCATTAATCACACTTGGCAATGAGAGGACTTTAAACCACGAGGACATCCCTCGTCTTGGTACTGGTGACAGTGCCTATGGGAATTTTCAAACTTTTAGAAGCAAACTCGAGTCAGAGTGTGGTAGTGTTAGGAATGTGACCACTCTTAAGCTGGCCAAGGTTTTATTCTTGTCGACATGGCATGGGATCTTCTTATCAGGTTTATTTGCATTCCTGAATACGTGTGCTTCTTATGTTGGACCCTTTCTTATTGATATCCTTGTTCAATACCTCAACGGAGAACATATGTTTAAGTATGAAGGATATGTTTTGACTGCGGCATTTGTTGCTGCAAAGCTTTTGGAGAGTCTTTCAGACAGGCACTGCATGTTCAGGTTCCAGCAGGTTGGGGTTCAAGTTCAATCAAAGTTGGTGGCAATGATCTATGCTAAAGGTTTGACTCTTTCGTGTCAGTCAAAGGAGGTTCATAGCACAGGGGAAATCATCAACTTAATGACTGTTGATGCTTCGAGGATTGGAGAATTTTGTTGGTATATGCATCGACCCTGGATGTGCGTTTTGCAAGTTGCTCTGGCCTTGTTGATTCTCTATAGAAGCGTAGGGGTTGCTTCAATAGCTGCTCTTGCTGCCACTGTAATTGTAATGTTGCTGAACCATCCCGTGGCATCATTGCAGGAAAAGTTTCAAGGCAAGGTAATGGAGTGCAAAGATAAAAGAATGAAGGCTACATCTGAGATTCTTAAGAATATGAGGATTCTAAAACTGCAAGCATGGGAGATGAAGTTCTTATCAAAGATTATTCAGCTTAGGAAAACAGAGGAGATATGGCTTAAGAAATTTCTCGCTGGTACAGCAATTGTTAGATTTGTCTTCCATAATGCCCCAACTTTTATTGCAGTGGTTACTTTCGGTACTTGTGTTCTTATAGGTATCCCACTTGAATCGGGAAAGGTCTTATCTGCACTTGCAACATTCCGAATTCTTCAAATGCCTATCTACGCTCTTCCTGACACGGTTACAATGATTGCACAAAGTAGGATTTCTCTTGAAAGGATTGCATCATTTCTTCGTTTAGAAGAGTTGCAGACTGATGTAGTAGAGAAGCTTCCTTGGGGTAGTTCTGATAAGGCTGTTGAATTAGTAGATGGAAATTTCTCTTGGGATTTATCTTCCTCTGATCCAACATTGAAAAACATAAATCTCACAGTTTTTCATGGTACGAGGGTTGCTGTGTGTGGTACTGTTGGATCAGGAAAGTCTAGTTTACTTTCTTGCATTATAGGGGAAGTACCAAAGATATCTGGGACATTGAAAATATGTGGAACAAAGGCTTATGTTTCTCAATCACCATGGATTCAGAGTGGCAAGATAGAAGAGAACATATTGTTTGGTAAAGAGATGGACAGGGAAAAGTATGAGAAGGTACTAGAAGCATGTTCCTTGAAAAAAGACCTTGAGATTCTTCCATTTGGTGATCAAACCATTGTTGGAGAGAAAGGGATCAATTTGAGTGGTGGACAGAAGCAAAGAGTGCAAATAGCGCGTGCTATATACCAAGATGCTGATATATATCTTTTTGATGATCCATTCAGTGCAGTGGATGCTCATACGGGATCTCATCTCTTTAAGGAATGCTTGCTTGACCTTTTAAAATCCAAAACTGTGATATACGTAACCCATCAAGTAGAATTCTTACCTGATGCTGATCTAATACTGGTCATGAGAGAAGGAAGAATAACTCAATCGGGAAAATTCAATGACATTCTTAGGTCAGGGACTGATTTTATGGAACTTGTAGACGCACACAGAGCAGCTTTATCTTCATCGATAAAGTCCCTAGAGAGAAGACCAACATTTAAACAACAAAGTAGCACCAAGGAGAAAAAAAATTCATTAACTGACTTTGAATATGAGCAAAATGAGGAAAACATACATGATAAGAATGATAACATAGATGACACAAATGAATCAAAAGGACAACTTGTTCAAGAAGAAGAAAGGGAAAAGGGTAGAGTTGGGTTTAATGTATACTGGAAATACATCACAACAGCTTATGGAGGAGCTCTTGTGCCCTTCATATTACTTGCTCAGACACTCACCGTGGGTTTTCAAGTTGCAAGCAATTACTGGATGACTGTGGCAACTCCAGTTTCAGGGACTACTGAACCTCATATTGGAAGCCTTACACTTATGCTTGTCTATGTCGCATTGGCAATTGGAAGCTCAATTTGCACCCTTGCCAGAGCATTTATTGCTGTGATAGCTGGATATAAAACAGCCACTGTGCTCTTCAGTAAAATGCATTTCTGTGTTTTTCGAGCACCAATATCTTTTTTTGATGCCACCCCAAGTGGTCGAATCCTGAACAGAGCTTCAACAGATCAAACTGAACTAGATATGAGCATTCCAGGATTGATATGGGCAATTACCCTTAATTTGATTCAAATATTGGGAAATATTGCTGTAATTTCTCAAGCGGTATGGCAGGTGTTCATAGTACTGATTCCTGTAATGGCAGCATGCATATGGTACCAGAGATACTATTCTGCATCTGCAAGGGAACTGGCGCGATTAGTTGGTACATGTCAAGCTCCAGTTATACAACATTTTTCAGAAACTATTTCAGGATCAACAACCATAAAATGTTTTGAGCAAGAATCAAGATTTAAGGACATAAATATGAAATTGATAGACAGATATTCCCAACCCAAATTATACAGTGCTGCTGCAATTGAATGGTTGAATTTCAGATTGGATATTCTATCCACTCTCACATTTGCCTTCTGTTTGGTTTTCTTGATATCTTTTCCAAACTCATTTACTGCTCCAGGGATTGCTGGACTGGCTGTGACATATGGACTTAATCTAAACTCTCTACAGACTAATATAATCTGGTTTATTTGCACTTTGGAGAACAAAATTATATCTGTTGAAAGAATACTCCAATACACATCTCTCCCAAGTGAAGCTCCTCTTGTGATTAAAGAAAACCAGCCAGAATATTCTTGGCCATCATTTGGAGAGGTTCATATCCAGGATTTACAGGTTCGATATGCTCCTCACTTGCCTATTGTTTTACGAGGTCTTACTTGCACTTTTACTGCTGGATCAAAAACTGGTATTGTGGGAAGAACAGGAAGTGGAAAAACAACTCTAGTGCAAACAATTTTCCGACTTGTTGAACCTGTTGCTGGACAAATACTGATAGATAGCATTAACATCACTTCGATTGGAATTCATGATTTGCGGTCCAGACTAAGCATTATTCCTCAAGAGCCAACAATGTTTGAAGGGACTGTAAGAACCAACCTGGATCCACTGGAAGAGTACACAGATGAACAGATTTGGCAGGCATTAGAGATGTGCCAACTTGGAGATGAAGTAAGGAAAAAAGAAGGGAAGCTCGACTCCATAGTTACTGAAAATGGAGAAAATTGGAGCATGGGTCAAAGGCAATTGGTCTGCCTAGGCCGTGTTCTACTGAAGAAAAGCAAGATCTTGGTGCTTGATGAAGCTACAGCATCAGTTGATACAGCCACAGATAATATTATTCAGCAAACAGTTAAGCATCATTTTGCAGAATGCACAGTCCTCACCATTGCTCATAGGATAACTTCAATCATTGACAGTGACATGGTTCTGTTTTTAAATCAAGGGCTGATTGAAGAATATGATTCACCAAAGAAACTGCTTAAGAACAAATCTTCAGCTCTAGCTCTACTGGTTGCAGAATACACAAGGAGATCAGATTCTGGTTTTGGAAATTAA 3906 0.3966 MAKLSPLEETLLNGDSSASSKTKGKENLTRNSNAGFFNTLTFSWITPLITLGNERTLNHEDIPRLGTGDSAYGNFQTFRSKLESECGSVRNVTTLKLAKVLFLSTWHGIFLSGLFAFLNTCASYVGPFLIDILVQYLNGEHMFKYEGYVLTAAFVAAKLLESLSDRHCMFRFQQVGVQVQSKLVAMIYAKGLTLSCQSKEVHSTGEIINLMTVDASRIGEFCWYMHRPWMCVLQVALALLILYRSVGVASIAALAATVIVMLLNHPVASLQEKFQGKVMECKDKRMKATSEILKNMRILKLQAWEMKFLSKIIQLRKTEEIWLKKFLAGTAIVRFVFHNAPTFIAVVTFGTCVLIGIPLESGKVLSALATFRILQMPIYALPDTVTMIAQSRISLERIASFLRLEELQTDVVEKLPWGSSDKAVELVDGNFSWDLSSSDPTLKNINLTVFHGTRVAVCGTVGSGKSSLLSCIIGEVPKISGTLKICGTKAYVSQSPWIQSGKIEENILFGKEMDREKYEKVLEACSLKKDLEILPFGDQTIVGEKGINLSGGQKQRVQIARAIYQDADIYLFDDPFSAVDAHTGSHLFKECLLDLLKSKTVIYVTHQVEFLPDADLILVMREGRITQSGKFNDILRSGTDFMELVDAHRAALSSSIKSLERRPTFKQQSSTKEKKNSLTDFEYEQNEENIHDKNDNIDDTNESKGQLVQEEEREKGRVGFNVYWKYITTAYGGALVPFILLAQTLTVGFQVASNYWMTVATPVSGTTEPHIGSLTLMLVYVALAIGSSICTLARAFIAVIAGYKTATVLFSKMHFCVFRAPISFFDATPSGRILNRASTDQTELDMSIPGLIWAITLNLIQILGNIAVISQAVWQVFIVLIPVMAACIWYQRYYSASARELARLVGTCQAPVIQHFSETISGSTTIKCFEQESRFKDINMKLIDRYSQPKLYSAAAIEWLNFRLDILSTLTFAFCLVFLISFPNSFTAPGIAGLAVTYGLNLNSLQTNIIWFICTLENKIISVERILQYTSLPSEAPLVIKENQPEYSWPSFGEVHIQDLQVRYAPHLPIVLRGLTCTFTAGSKTGIVGRTGSGKTTLVQTIFRLVEPVAGQILIDSINITSIGIHDLRSRLSIIPQEPTMFEGTVRTNLDPLEEYTDEQIWQALEMCQLGDEVRKKEGKLDSIVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNIIQQTVKHHFAECTVLTIAHRITSIIDSDMVLFLNQGLIEEYDSPKKLLKNKSSALALLVAEYTRRSDSGFGN 1301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00887 1301 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 32 1288 - -
Viun6g00887 1301 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1045 1281 IPR027417 -
Viun6g00887 1301 CDD ABC_6TM_ABCC_D2 736 1030 IPR044726 GO:0140359
Viun6g00887 1301 MobiDBLite consensus disorder prediction 688 711 - -
Viun6g00887 1301 FunFam ABC transporter C family member 10 93 406 - -
Viun6g00887 1301 MobiDBLite consensus disorder prediction 10 26 - -
Viun6g00887 1301 CDD ABCC_MRP_domain1 424 624 - -
Viun6g00887 1301 Pfam ABC transporter 1073 1220 IPR003439 GO:0005524
Viun6g00887 1301 ProSitePatterns ABC transporters family signature. 549 563 IPR017871 GO:0005524|GO:0016887
Viun6g00887 1301 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1055 1289 IPR003439 GO:0005524
Viun6g00887 1301 SUPERFAMILY ABC transporter transmembrane region 105 406 IPR036640 GO:0005524|GO:0016020
Viun6g00887 1301 Coils Coil 683 703 - -
Viun6g00887 1301 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 110 390 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun6g00887 1301 Gene3D ABC transporter type 1, transmembrane domain 83 405 IPR036640 GO:0005524|GO:0016020
Viun6g00887 1301 Gene3D ABC transporter type 1, transmembrane domain 698 1036 IPR036640 GO:0005524|GO:0016020
Viun6g00887 1301 Pfam ABC transporter transmembrane region 738 980 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun6g00887 1301 Pfam ABC transporter transmembrane region 109 377 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun6g00887 1301 Gene3D - 1038 1290 IPR027417 -
Viun6g00887 1301 Pfam ABC transporter 442 576 IPR003439 GO:0005524
Viun6g00887 1301 MobiDBLite consensus disorder prediction 1 26 - -
Viun6g00887 1301 FunFam ABC transporter C family member 5 699 1036 - -
Viun6g00887 1301 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 424 647 IPR003439 GO:0005524
Viun6g00887 1301 SMART AAA_5 451 624 IPR003593 GO:0016887
Viun6g00887 1301 SMART AAA_5 1081 1266 IPR003593 GO:0016887
Viun6g00887 1301 FunFam ABC transporter C family member 3 1038 1290 - -
Viun6g00887 1301 SUPERFAMILY ABC transporter transmembrane region 736 1037 IPR036640 GO:0005524|GO:0016020
Viun6g00887 1301 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 738 1018 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun6g00887 1301 Gene3D - 406 672 IPR027417 -
Viun6g00887 1301 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 421 646 IPR027417 -
Viun6g00887 1301 CDD ABC_6TM_ABCC_D1 111 398 IPR044746 GO:0140359
Viun6g00887 1301 FunFam ABC transporter C family member 5 409 656 - -
Viun6g00887 1301 CDD ABCC_MRP_domain2 1053 1273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00887 Viun-Chr6 18626344 18631948 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00887 424 671 Calmodulin-binding Proteins AT2G36910 30.224 3.16e-26 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00887 - K05666 gmx:106794105 2179.83