Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00885 ATGGCGGAAACTGCAGTGTCTTTTTCGAGTCAACATGTGCTTCCAAAATTGTTGGAAGCTGTAAAGATGCTGAGAAATCTGCCAAAAGAAGTTGCAGAAGTTATAGATGAACTAGAAAGCTTTCAAGATTTCATCGATGATGAAGATAAAGTGGCTGAAGCTGAACATGATCACAATAGGCGCGACAGAATCATAAAAGGGTTGACGAGGCTGAGAGAAGCAGCTTTTCGCATGGAAGATGTAATTGATGACTACGTGATATGTGATGAAAAACAACCTGAAGATCCTCGATGTGCGGCTTTACTCTGTGAGGTTGTTGAGTTCATCAAAACTCAAATCCACCGCCTTCAAATAGCGTATCAGATTCAGGATGTTAAGGCACTTCTTCGTGCAGAAAGAGATGGCTTCGAAAACCGTTTTCGTACAGGATCAAGATCAGACGGTACTAGGGGAAATGAAAATTTCACATGGCAGAAACTTCGAATGGATCCTCTCTTTATTAAGGAAGACGAGGTTGTTGGCTTTGAAGAAGATATAGATACACTGAAAAAGTGTTTGACAGAGGGAAGAAAAGAACGCACTGTCATCTCTATTGTAGGAATGGCAGGATTGGGAAAAACCATACTTTCTAAGCAAGTTTTTGACAGGGTCCATACAGACTTTGAGTGCCATGCGTTGATCACAGTGTCCCGATCCTACACTGTTGAAGGGTTGCTGAGGGATATGACGAACAAGCTTTGCAAAGAGAGAAGGGAGGATCCTCCTCGGGATGTTGCATTTATGGATCAAATGTCGTTGATAAAAGAAGTCAGAAACCGCCTTCACAATAAGAGGTATGTTGTCTTGTTTGATGACGTGTGGAATGAAACATTTTGGGATGACATTGAATTGGCTCTAATTGATAACAAAAATGGAAGTAGGATATTAATCACTACCCGGGATCAGAAGGTTGTGGATTTCTGTAAGAAATGCTTATTTTTTGAGGTGCATAAGCTACAACCTTTAAGTAATTCAAAATCATTGGAGTTGTTATGTAAGAAGGCATTTGGGAATGGCTTTCATGGGTGTTGTCCAAAAGATTATGAAGAAGTAGGTCTGGACATTGTTAGGAAGTGTGGATGTTTACCTCTTGCAATTGTAGCTATCGGTAGTCTTTTGTATAGAAAATGTAAAAGTCCATCTGATTGGGGCCTTTTTAGTCAACATCTAAGTTTAGAGTTGGAGAGCAATTCGGAGTTAGACTGTGTAAAAAAAATTTTAAGTTTGAGTTACGATGATTTGCCACAGAATCTGAGGTCATGTTTGTTGTATTTCGGAATATATTCTAAAGATTACAAAGTTAAATGTAGTAGATTATTTCAGCAGTGGATAGCTGAAGGGTTTGTGAAACAAGAACGCGGAAGAAATTTAGAAGAAGTTGCAGAACAACAAATAATGGAGTTGATTAGTAGAAGCTTGGTACTAGTATCATCATTTACCACAGAAGGCAAAGTGAAAGCATGTCATGTTCATGACTCAATACATGAAATGATCCGTGAAAAAATGAAGAACACAGGGTTTTGTCACTATATTGATGAGCATAATGATTTTGAGTCAAGTGGTATGATTCGACGCTTAACAATAGCAACAAATTCCTATGATTTAAGTGGGAGTAGTGAAGGATCACAATATGTTCGGTCAATTTTTATTTTCACGAATGAATTGTCATCTGAAGGGTTCACCAGGTGCTTGCTTGCAAAATACACGCGATTGAAGGTGCTCATTTTTGAAATTGCTCCATTATATGATGTGCCTGAAAATTTGGGGAGTTTAATCCACTTAAAGTATCTAAGCTTCCGGAATACATCCATAAGAAGTCTTCCAAAATCCATTGGTGAGCTACAGAATTTGGAGAGCTTAGATGTACGAACAAATAGGGTGATTGAGGTACCAAAGGAGATTACGAAGCTTAGAAAGCTACGCTGTCTTTTCGGTTACCGAATATCTACCATTGAAGTGAAGGACAGTCTTGGAAAAATGACATCGCTTGAAAAGATGCATGAATTGAGAATAGATGAAGATGGAGTGGTGATTAGAGAGCTTGGAAAGCTAAATCAATTAAGGGATCTAAGGCTTTCTAATTTTATGGGAGATCATTCTGATGCTCTTTCTTCTTCGATAAACGAAATGCAACTCTTGGAGCGACTAGATATCTTCGTACAATATATGAGTGAACCAATTGACTTGCACATTACATCACCCTTGTATAAACTAAGGAAGCTTCACCTTTTTGGCATTTTAAAAGAGTTTCCAAGTTGGATTCCACGGCTCCAAAATCTTGTGAAATTGTCTTTGAAACTTTCCATGTTAAATAACATTCCATTGAAATCTCTGGGAAATATGCCAAATTTGTTGATCCTCTCTTTCGACTCCGGTTCTTATGAAGGAGAAACTTTACATTTTGAAAATGGAGGATTTCAGAAATTAAAGGAGCTACGGTTCAGAGCTTTGTATAATTTGAGATCCATCTTTATTGATAAGGGGGCACTGCAATCTTTGGAAAAGCTTCATATGTTTGATCTTCCACAACTGAAGGCAGTACCCTCTGGCATTCAGCACTTAAAAAAACTCCACGTTCTCGACATCTTTCATATGCCGACTGAATTTCACCAGAGGATTGAACCCGAAACAGGAGAAGACCATTGGATGGTCAAACACGTGGCCGATGTACTTGCTGGGTCTGATTTCAAGAATCAGCTAATGTACGATTTGAGTAAAAATATTTTTATGGAGGGAGTGGCCGACATTTTACGGTATATTGATGGGATCGAGGTTCTTGCATCGAGTGCCAGTGGAGTTGTTGGTGGGGATGATCCATTCCAGATCAAATTATGA 2874 0.3876 MAETAVSFSSQHVLPKLLEAVKMLRNLPKEVAEVIDELESFQDFIDDEDKVAEAEHDHNRRDRIIKGLTRLREAAFRMEDVIDDYVICDEKQPEDPRCAALLCEVVEFIKTQIHRLQIAYQIQDVKALLRAERDGFENRFRTGSRSDGTRGNENFTWQKLRMDPLFIKEDEVVGFEEDIDTLKKCLTEGRKERTVISIVGMAGLGKTILSKQVFDRVHTDFECHALITVSRSYTVEGLLRDMTNKLCKERREDPPRDVAFMDQMSLIKEVRNRLHNKRYVVLFDDVWNETFWDDIELALIDNKNGSRILITTRDQKVVDFCKKCLFFEVHKLQPLSNSKSLELLCKKAFGNGFHGCCPKDYEEVGLDIVRKCGCLPLAIVAIGSLLYRKCKSPSDWGLFSQHLSLELESNSELDCVKKILSLSYDDLPQNLRSCLLYFGIYSKDYKVKCSRLFQQWIAEGFVKQERGRNLEEVAEQQIMELISRSLVLVSSFTTEGKVKACHVHDSIHEMIREKMKNTGFCHYIDEHNDFESSGMIRRLTIATNSYDLSGSSEGSQYVRSIFIFTNELSSEGFTRCLLAKYTRLKVLIFEIAPLYDVPENLGSLIHLKYLSFRNTSIRSLPKSIGELQNLESLDVRTNRVIEVPKEITKLRKLRCLFGYRISTIEVKDSLGKMTSLEKMHELRIDEDGVVIRELGKLNQLRDLRLSNFMGDHSDALSSSINEMQLLERLDIFVQYMSEPIDLHITSPLYKLRKLHLFGILKEFPSWIPRLQNLVKLSLKLSMLNNIPLKSLGNMPNLLILSFDSGSYEGETLHFENGGFQKLKELRFRALYNLRSIFIDKGALQSLEKLHMFDLPQLKAVPSGIQHLKKLHVLDIFHMPTEFHQRIEPETGEDHWMVKHVADVLAGSDFKNQLMYDLSKNIFMEGVADILRYIDGIEVLASSASGVVGGDDPFQIKL 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00885 957 Gene3D - 4 119 - -
Viun6g00885 957 PRINTS Disease resistance protein signature 195 210 - -
Viun6g00885 957 PRINTS Disease resistance protein signature 273 287 - -
Viun6g00885 957 PRINTS Disease resistance protein signature 625 641 - -
Viun6g00885 957 PRINTS Disease resistance protein signature 372 386 - -
Viun6g00885 957 Gene3D Ribonuclease Inhibitor 548 891 IPR032675 -
Viun6g00885 957 PANTHER DISEASE RESISTANCE PROTEIN RP 33 843 IPR044974 GO:0006952
Viun6g00885 957 SUPERFAMILY L domain-like 503 882 - -
Viun6g00885 957 Gene3D - 334 423 IPR042197 -
Viun6g00885 957 Pfam NB-ARC domain 176 426 IPR002182 GO:0043531
Viun6g00885 957 FunFam Probable disease resistance protein At1g61300 158 323 - -
Viun6g00885 957 Pfam Rx N-terminal domain 5 96 IPR041118 -
Viun6g00885 957 Gene3D - 424 515 IPR036388 -
Viun6g00885 957 CDD RX-CC_like 2 127 IPR038005 -
Viun6g00885 957 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 438 IPR027417 -
Viun6g00885 957 FunFam Probable disease resistance protein At1g63360 424 513 - -
Viun6g00885 957 Gene3D - 160 325 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00885 Viun-Chr6 18618001 18623210 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00885 171 393 WRKY Transcription Factor Family AT5G45050 23.661 1.29e-10 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00885 K13457 - gmx:100305454 1021.92