Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00884 ATGGCAGAAACTGCTTTGTCCTTGGCTCGTAAGTATGTGTTTCCAAAACTTTTGGAAGCTGTCAATATGATAAGAGATCTCCCAAAAGAAGTTGACGACCTTACAGATGCACTTGAAACCTTTCGGTATTTCATCAATGAGACAGAAGAAGTGGTTGAAGCTGAAGAAGATAGCAATAGGCGTGATAGAATGAGTACAAGGTTGATGAAGATGAGAGAAGCAACCTTCCGCATGGAAGATGTCATCGATGACTATGTGATATGTGGCGAAAACCAACCTCAAGAAGATCCTCGATGTGCAGCTTTACTCTGTGAGGCTGTTGAGTTCATCAAAACTCAAATCTCTCGCCTTCAAATAGCACACAAGATTCGAGATGTCAAATCACTTGCTAGTGCTGCAAAAGATGGTTTTGAAACCCATTTTCCTTCAAAAAAAAGTCCAAGCAATTCTGAAAGAAACCAAAACGGCAATTGGCAGAAACTGCGAAAGGATGCTCTTCATGTTAAGGAAGATGAGGTTGTGGGGCTTGATGGTCCAAGAACTATATTGACAAATTGGTTGACAAAGGGACGAAATGGGCGCACTGTGATTTTTGTTGTAGGCATTCCAGGAGTTGGAAAAACCACTCTTGCCAAGCTAGTTTTTGACAAGGTCCGTAACGACTTCGACTGCCATGCATCAATCAGAGTCTCTCAATCCTACAATGTAGAAAAACTGTTGAGGGATATGATTCACCAACTTTGCAAGGCAAGTAAGGAAGATCCTCGACGGAATGTTTCTGAGATGGGCCAAGCTTCTTTGATAGAGGAAGTAAAAGATCTTTTGCACAAGAAGAGGTATGTTGTCTTGTTTGATGACCTATGGAATGAAAATTTTTGGAATGACATTGAATCTGCTCTAATTGATGATAACAATAAAAGTAGAATAATAATCACAACAAGGCACGAGGAGGTTGCGGTCTTCTGTAAGAAATCTTCTTTTGTTGAAGTGCATAAGCTAGAAAAACCTTTGAGTGAAGATGAATCTTTCAGATTGTTCTGTAGGAAGGCATTTATGTATGGTTCTTCTGGAGGCTGTCCAGAAGAACTCAAAGACACATCTCTTGAAATTGTTAGGAAGTGTAAAGGTTTACCTCTAGCAATTGTGGCCATTGGTGGAGTCTTGGCCCAGAAAGATGAAAACCCACATGAATGGAAACTGGTTAATCAAAATCTAAGTTTGGAGGGGAATTCAGAATTGAACATTATAACAAAAATATTAGGCTTAAGTTATCATGATTTACCCATAAATCTCAAATCCTGTTTATTGTATTTCGGAATGTATCCGGAAGACTGCGAAATTGAATCAGATAGGGTGATTAGGCAGTGGGTGGCTGAAGGATTTGTCAGACATAAAACCGGAAAAACATTAGAAGAAGTTGCAGAAGAAGATTTATTAGGGTTGATCCGTAGAAATTTGGTGCAAGTATCTTCATCTAGCATTGATGGGAAAGTTAAAAGATGTCGTGTACATGACTTAATACATGACATGATCCTCAGAAAAGCGAAGGATAGTGGGTTTTGTGGGTATATTGGTAGAAATGATGAATGTGTGTCAAGTGGGATTGTTCGACGTCTGATAATTATTGCAAAGGATGATTTAATTGGAAGTGTTGAAAGCTCACTCATTCAATCAATTGCTATCAATGAAGGAAGGAGTAGGAAATTGACTGAGAACTTCGTATTGGAATTCCTTGGAGATTACACGTTATTATTGAGTGAGGACTTGGTATGGAAAATCCTTGAAAATTACACGTCATTGAAGGTACTTGACTTTGAAGGTGCTCCTTTACCTTGTGTTCCTGAAAATTTGGGGCATTTAATCCACTTGAGGTATCTAAGCTTCAGGGGGACGGGGTTAGAAATTCTTCCAAAATCCATTGGTAAACTCCAGAACTTGGAGACCTTGGATATACGGAAGACAGATGTGCATTATATTCCAAGGGACTTTTACAAACTCAGTAAGTTACGTCATTTTCTGGCTGACAAAGTATCTAAAATTGAATGGAGGTATATTGGAGGCATGACATCCCTACAAACGATACCTCCAGTGTCTAGATGTTATCATGCAGATGACATTGGAGAGGTAGCGAAGCTAAAGCAGTTAAGGGTTCTGAGGGTGCTTGTTTCAGATACAAATCTCGTGAAGAGTCTGTGTTCTGCAATAAATGAGATGCAACAGTTGGAGGAACTACATATTGCAGTAGATTATTATATCAGCGAAGTGATTGATTTGAACATTACATCACCTTTGGCTAGACTTAGGAAGCTTTTCCTCGACATGAAGTTAAAAGGATTACCAGATTGGATTCCCCAACTCCAAAAGCTTGTGAAATTGAGCTTGTGGCGCACTGGCTTAGCTAATGATGAGTTGCAATCACTAAAAGATATGCCTAGCTTGTTGGTCCTCCACTTATGGTTCGCTTTAGAAGGTGAAACTCTGCATTTTCAATGTGGAGGGTTTCAGAAACTAAAAAAACTGCATCTCAATTATTTGAGTAACCTGAATTCCATCCTTATTGATAGAGGAGCACTGCATTCTTTGGAACACATGAGGTTAAAAGGCCTCCTTAAACTCAAAACAGTACCTGATGGCATTCAACACTTGGGGAATCTGAAACTTGTCGAACTCACGTCTATGCCAACTGAATTTAAGAAGAAGATTGTTCCCATTGCAGAACAACAGCACTGCGTCGTACAATATAAGACCAGACCTAGACTATCCGCTACATGGAAGAAACATGGGAAATAA 2790 0.3946 MAETALSLARKYVFPKLLEAVNMIRDLPKEVDDLTDALETFRYFINETEEVVEAEEDSNRRDRMSTRLMKMREATFRMEDVIDDYVICGENQPQEDPRCAALLCEAVEFIKTQISRLQIAHKIRDVKSLASAAKDGFETHFPSKKSPSNSERNQNGNWQKLRKDALHVKEDEVVGLDGPRTILTNWLTKGRNGRTVIFVVGIPGVGKTTLAKLVFDKVRNDFDCHASIRVSQSYNVEKLLRDMIHQLCKASKEDPRRNVSEMGQASLIEEVKDLLHKKRYVVLFDDLWNENFWNDIESALIDDNNKSRIIITTRHEEVAVFCKKSSFVEVHKLEKPLSEDESFRLFCRKAFMYGSSGGCPEELKDTSLEIVRKCKGLPLAIVAIGGVLAQKDENPHEWKLVNQNLSLEGNSELNIITKILGLSYHDLPINLKSCLLYFGMYPEDCEIESDRVIRQWVAEGFVRHKTGKTLEEVAEEDLLGLIRRNLVQVSSSSIDGKVKRCRVHDLIHDMILRKAKDSGFCGYIGRNDECVSSGIVRRLIIIAKDDLIGSVESSLIQSIAINEGRSRKLTENFVLEFLGDYTLLLSEDLVWKILENYTSLKVLDFEGAPLPCVPENLGHLIHLRYLSFRGTGLEILPKSIGKLQNLETLDIRKTDVHYIPRDFYKLSKLRHFLADKVSKIEWRYIGGMTSLQTIPPVSRCYHADDIGEVAKLKQLRVLRVLVSDTNLVKSLCSAINEMQQLEELHIAVDYYISEVIDLNITSPLARLRKLFLDMKLKGLPDWIPQLQKLVKLSLWRTGLANDELQSLKDMPSLLVLHLWFALEGETLHFQCGGFQKLKKLHLNYLSNLNSILIDRGALHSLEHMRLKGLLKLKTVPDGIQHLGNLKLVELTSMPTEFKKKIVPIAEQQHCVVQYKTRPRLSATWKKHGK 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00884 929 Gene3D Ribonuclease Inhibitor 579 916 IPR032675 -
Viun6g00884 929 MobiDBLite consensus disorder prediction 138 157 - -
Viun6g00884 929 Pfam Rx N-terminal domain 9 94 IPR041118 -
Viun6g00884 929 Gene3D - 336 423 IPR042197 -
Viun6g00884 929 FunFam Probable disease resistance protein At1g63360 424 513 - -
Viun6g00884 929 Pfam NB-ARC domain 183 425 IPR002182 GO:0043531
Viun6g00884 929 Gene3D - 159 330 IPR027417 -
Viun6g00884 929 PANTHER DISEASE RESISTANCE PROTEIN RP 66 861 IPR044974 GO:0006952
Viun6g00884 929 MobiDBLite consensus disorder prediction 142 157 - -
Viun6g00884 929 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 438 IPR027417 -
Viun6g00884 929 SUPERFAMILY L domain-like 502 896 - -
Viun6g00884 929 Gene3D - 424 515 IPR036388 -
Viun6g00884 929 FunFam Probable disease resistance protein At1g61300 157 326 - -
Viun6g00884 929 Gene3D - 7 120 - -
Viun6g00884 929 PRINTS Disease resistance protein signature 274 288 - -
Viun6g00884 929 PRINTS Disease resistance protein signature 196 211 - -
Viun6g00884 929 PRINTS Disease resistance protein signature 374 388 - -
Viun6g00884 929 PRINTS Disease resistance protein signature 641 657 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00884 Viun-Chr6 18605592 18609527 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00884 201 395 WRKY Transcription Factor Family AT5G45050 28.205 1.92e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00884 K13457 - gmx:100805006 1017.3