Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00882 ATGGCAGAAACCGCTTTGTCCTTGGCTCGTCAGCATGTGTTTCCAAAGCTTTTGGAAGCTGTCAATATGATGAGAGATCTACCAAAAGAAGTTGCAGAGCTTAAAGATGAACTTGAAAGCTTTCAGTATTTCATCAATGAGACAGATGAAGTGGTTGAAGCTGAAGAAGATAGCAATAGGCGCGATAGAATGAGTAAAAGGTTGATGAAGCTGAGAGAAGCAACCTTTCGCATGGAAGATGTCATCGATGAGTATGTGTTAATTGAAGAAAACCAACCTCAAGAAGATCCTCGATGTGTGGCTTTACTCTGCGAGGCTGTTGAGTTCATCAAAACTCAAATCTCTCGCCTTCAAATAGCACACAAGATTCGAGATGTCAAATCACTTGCTAGTGCTGCAAGAGATGGTTTTGAAACCCATTTTCCTTTAGACCCAAGGCCAAGCAATTCTAGAGGAAATGAAAACGTCAATTGGGACAAACTTCGAATGGATCCTCTCTTTGTTAAGGAAGATGAGGTTGTGGGGCTTGATGGTCCTAGAACTATATTGACAAATTGGTTGAGAGAGGGACGAAATGGACGCACTGTGATTTCTGTCATAGGCATTCCAGGAGTTGGAAAAACCACTCTTGCCAAGCAAGTTTTTGACAAGGTCCATAACGACTTTGAGTGCCATGCATTGATCACAGTCTCTCAGTCCTACAGTGTTGAAGAATTGTTGAGGGATATGATTCAGAAACTTTGCAAGGAAAGAAAAGAAGATCCTCCACAGAATGTTTCTAAGATGGGCCGAAGCTCTTTGATAGAGGAAGTAAGAGATCGTTTGCACGAGAAGAGGTATGTTGTCTTGTTTGATGACGTATGGAATGAAAAATTTTGGGATGAGATTGAATCTGCTTTAATTGATGATAACAATAAAAGTAGAATAATAATCACAACAAGGTACGAGAAGGTTGCGGTGGTCTGTAAGAAATCTTCTTTTATTGAAGTGCATAAGCTAGAAGAACCTTTGAGTGAAGATGAATCTTTCAGATTGTTCTGTAGGAAGGCATTTATGTATGGTTCTTCCGGAGGCTGTCCAGAAGAACTCAAAGACATATCTCTTGAAATTGTTAGGAAGTGTAAAGGTTTACCTCTAGCAATTGTGGCCATTGGTGGAGTCTTGTCCCAGAAAGATGAAAGCCCACATGAATGGAAACTGTTCAATCAAAATCTAAGTTTAGAGTTGGAGAGGAATTCAGAATTAAACAATATAACAAAAATATTAGGCTTAAGTTATCATGATTTGCCCATGCATCTGAGGTCATGTTTATTGTACTTCGGAATGTACCCGGAAGATTGCGAAATTGAATCAGATAGAGTGATTAGGCAGTGGATGGCTGAAGGATTTGTCAGACATGAAATCGGAAAAACATTAGAAGAAGTTGCAGAAGAAGATTTATTAGGGTTGATCCGTAGAAATTTGGTGCAAGTATCTTCATCTAGCATTGATGGGAAAGTTAAAAGATGTCGTGTACATGACTTAATACATGAGATGATCCTCAGAAAAGCGAAGGATAGTGGGTTTTGTGGGTATATTGGTAGAAATGATGAATGTGTGTCAAGTGGGATTGTTCGACGTCTGATAATTACTGCAGAGGATGATTTAATTGCAAGTGTTGAAAGCTCACTCATTCAGTCAATTCTTTTCATTGAAGAAAGGCGTACGACATTGACTGAGGAGGACTTTGTAAGAAAAATCATATCATCATCAGTATGGACTGAGGACATGGTAAGGAAAATCCTTGCAAATTACAGGTCATTGAAGGTACTTGACTTTGAAGGTGCTTATATATCTTGTGTTCCTGAAAATTTTGAGCATTTAATCCACTTGAGGTATTTAAGCTTGAGGAGAACTGGGGCAATGAGTCTTCCATCCATTGGTAAGCTCCATAACTTGGAGACCTTGGATATACGAGACACAAATGTTCGTTATATTCCAACGGGCGTTTACAACCTTAGAAAGTTACGTCATTTTCTTGCTGACGAAGTAACAGAAATTGAATGGATGTATATTGGACGCCTGAAATCCCTACAAAAGATACCTATAGTATCTACAACTGATCTTGGAGAGGCCATTAGAGAGGTAGGAAAGTTAAAGCAGTTAAGGGTTCTGAGGGTGAAGCATATTGGTAAAGATGACGAGAAGACTCTGTGTTCTGCAATAAATGAGATGCAACAGTTGGAGGCATTACATATTGAAGCAGCAGATTATTATATCAGCGATGTGATTGATTTGAACATTACATCACCTTTATCTAGACTTAGAAAGCTTTTCCTTGACATTAAGTTAAAAGGATTACCAAATTGGATTCCCCAACTCCAAAATCTTGTGAAATTGAACTTGAGGCGCACTGTCTTAACTAATGATGAGTTGCAATCACTAAAAGATATGCCTAGGTTGTTGATCCTCCACTTATGCTTCGGTTTTAAAGGTGAAACTTTGCATTTTCAATGTGGAGGGTTTCAGAGACTAAAGAAAATGCATCTGGATTATTTGCTTAACCTGAATTCCATCCTTATTGACAGTGGAGCACTACATTCTTTGGAATATTTGTGGTTAAAACGCCTCCGTAAACTCAAAACAGTACCCGTTGGCATTCAACACTTGAAGAATCTGAAACTTGTCCAAATCACGTCTATGCCAACTGAATTTGAGCTGAGTATTCTTCCCATTGCAGAACAACAGCAATGGATCCTCCAATAG 2745 0.3894 MAETALSLARQHVFPKLLEAVNMMRDLPKEVAELKDELESFQYFINETDEVVEAEEDSNRRDRMSKRLMKLREATFRMEDVIDEYVLIEENQPQEDPRCVALLCEAVEFIKTQISRLQIAHKIRDVKSLASAARDGFETHFPLDPRPSNSRGNENVNWDKLRMDPLFVKEDEVVGLDGPRTILTNWLREGRNGRTVISVIGIPGVGKTTLAKQVFDKVHNDFECHALITVSQSYSVEELLRDMIQKLCKERKEDPPQNVSKMGRSSLIEEVRDRLHEKRYVVLFDDVWNEKFWDEIESALIDDNNKSRIIITTRYEKVAVVCKKSSFIEVHKLEEPLSEDESFRLFCRKAFMYGSSGGCPEELKDISLEIVRKCKGLPLAIVAIGGVLSQKDESPHEWKLFNQNLSLELERNSELNNITKILGLSYHDLPMHLRSCLLYFGMYPEDCEIESDRVIRQWMAEGFVRHEIGKTLEEVAEEDLLGLIRRNLVQVSSSSIDGKVKRCRVHDLIHEMILRKAKDSGFCGYIGRNDECVSSGIVRRLIITAEDDLIASVESSLIQSILFIEERRTTLTEEDFVRKIISSSVWTEDMVRKILANYRSLKVLDFEGAYISCVPENFEHLIHLRYLSLRRTGAMSLPSIGKLHNLETLDIRDTNVRYIPTGVYNLRKLRHFLADEVTEIEWMYIGRLKSLQKIPIVSTTDLGEAIREVGKLKQLRVLRVKHIGKDDEKTLCSAINEMQQLEALHIEAADYYISDVIDLNITSPLSRLRKLFLDIKLKGLPNWIPQLQNLVKLNLRRTVLTNDELQSLKDMPRLLILHLCFGFKGETLHFQCGGFQRLKKMHLDYLLNLNSILIDSGALHSLEYLWLKRLRKLKTVPVGIQHLKNLKLVQITSMPTEFELSILPIAEQQQWILQ 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00882 914 Pfam NB-ARC domain 184 427 IPR002182 GO:0043531
Viun6g00882 914 Pfam Rx N-terminal domain 6 93 IPR041118 -
Viun6g00882 914 FunFam Probable disease resistance protein At1g61300 159 326 - -
Viun6g00882 914 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 440 IPR027417 -
Viun6g00882 914 SUPERFAMILY L domain-like 504 898 - -
Viun6g00882 914 PANTHER DISEASE RESISTANCE PROTEIN RP 31 862 IPR044974 GO:0006952
Viun6g00882 914 Gene3D - 336 425 IPR042197 -
Viun6g00882 914 Gene3D - 165 330 IPR027417 -
Viun6g00882 914 Gene3D - 5 120 - -
Viun6g00882 914 Gene3D - 426 517 IPR036388 -
Viun6g00882 914 FunFam Probable disease resistance protein At1g63360 426 515 - -
Viun6g00882 914 Gene3D Ribonuclease Inhibitor 566 909 IPR032675 -
Viun6g00882 914 Coils Coil 54 74 - -
Viun6g00882 914 PRINTS Disease resistance protein signature 641 657 - -
Viun6g00882 914 PRINTS Disease resistance protein signature 196 211 - -
Viun6g00882 914 PRINTS Disease resistance protein signature 274 288 - -
Viun6g00882 914 PRINTS Disease resistance protein signature 374 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00882 Viun-Chr6 18562377 18572555 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00882 197 395 WRKY Transcription Factor Family AT5G45050 29.064 8.83e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00882 K13457 - gmx:100799057 1072.77