Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00878 ATGGCAGAAACTGCAGTGTCTTTTGCGAGTCAACATGTGCTTCCAAAATTTTTGGAAGCTGTAAAGATGCTGAAAGATCTCCCAAAAGAAGTTGCAGATGTTACAGATGAACTAGAAAACTTTCAAGATTTCATCCGTGATGCATATAAAGTGGCTGAAGTTGAAAAAGATCACAATAGGCGCGAAAGAATAAGAAAAAGGTTGATAAGGCTGAGAGAAGCAGCTTTTCGTATGGAAGATGTAATAGATGACTATGTGACATGTGACGAAAAACAACCTGAAGATCCTCGATGTGCGGCTTTACTCTGTGAGGCTGTTGAGTTCATCAAAACTCAAATCCACCGCCTTCAAATAGCGTATCAGATTCAGGATGTTAAGTCACTTGTTCGTGCAGAAAGAGATGGCTTCCAAAACCATTTTCCTACAGGATCAAGATCAGACGGCACTAGAGGAAATGAAAATTTCACATGGCAGAAACTTCGAATGGATCCTCTCTTTATTAAGAAAGATGAGGTTGTTGGATTTGAAGAAGATATAGATACACTGAAAAAGTGGTTGACAGAGGGAAGAGAAGAACGCACCGTCATCTCTATTGTAGGAATGGCAGGATTGGGAAAAACTACTCTTTCTAAGCAAGTTTTTGACCAGGTCCATACAGACTTTGAGTGCCATGCGTTGATCACAGTGTCCCGATCCTACACTGTTGAAGGGTTGCTGAGGGATATGACGAACAAGCTTTGCAAAGAAAGAAGGGAGGATCCTCCTCGGGATGTTGCAACAATGGATCAAATGTCGTTGATAGAAGAAGTCAGAAACCGCCTTCACAATAAGAGGTATGTTGTCTTGTTTGATGACGTATGGAATGAAACATTTTGGGATGACATTGAATTGGCTCTAATTGATAACAAAAATGGAAGTAGGATATTAATCACTACCCGGGATCAGAAGGTTGTGGATTTCTGTAAGAAATGCTTATTTTTTGAGGTGCATAAGCTACAACCTTTAAGTAATTCAAAATCATTGGAGTTGTTATGTAAGAAGGCATTTGGGAATGGCTTTCATGGGTGTTGTCCAAAAGATTATGAAGAAGTAGGTCTGGACATTGTTAGGAAGTGTGGATGTTTACCTCTTGCAATTGTAGCTATCGGTAGTCTTTTGTATAGAAAATGTAAAAGTCCATCTGATTGGGGCCTTTTTAGTCAACATCTAAGTTTAGAGTTGGAGAGCAATTCGGAGTTAGACTGTGTAAAAAAAATTTTAAGTTTGAGTTACGATGATTTGCCACAGAATCTGAGGTCATGTTTGTTGTATTTCGGATTGTATCCTGAAGATCATGAAGTCAAATGTGGTAGATTATTTCAGCAGTGGATAGCTGAAGGGTTTGTGAAACACGAACGTGGAAGAAATTTAGAAGAAGTTGCAGAACAACACTTAATGGAGTTGATTAGTAGAAGCTTGGTACTAGTATCATCATTTACCCCAGAAGACAAAGTGAAAGCATGTCATGTTCATGACTCAATACATGAGATGATCCGTGGAAAAATGAAGACTACGGGATTTTGTCACTATATTAATGATTTTGAGTCAAGTGGTATCTTTCGGCGCTTAACAATGGCAACAAGTTCCTATGATTTAAGTGGGACTAGTGAAGGATCACAGTATGTTCGGTCAATCCTTATTTTCACGAATGAAGTGTTATCTGAAGAGTTCACCAAGTACTTGCTTGCAAAATACATGCGGTTGAAGGTGCTGGATTTTGAATTTGCTGCATTGTATGATGTGCCTGAAAATTTGGGGTGTTTAATCCACTTAAAGTATCTAAGCTTCAGGAATACATCCATAAGAAGTCTTCCAAAATCCATTGGTAAGCTGAAGAATTTGGAGAGCTTAGATGTACGAACAAATAGGGTGATTGAGGTACCAAAGGAGATTACCAAACTTAGAAAGCTACGTTGTCTTTTCGGTTACCGAATATCTACCATTGCAGTGAAGGACAGTCTTGGAAAACTGACATCCCTAGAAAAGATGCATGAATTGAGAATAGATGAAGATGGAGTGGTGATTAGAGAGCTTGGAAAGCTAAATCAATTAAGAGATCTGAGGCTTTCTAATTTTATGGGACATCATTCTGATATTCTTTGTTCTTCAGTAAACAAGATGCAACTCTTGGAGCGACTAGATATCATCTTACAATATCTGAGTGAACCAATTCCAATTGACTTGCACATTACGTCATCCTTGTCTAAACTAAGGAAGCTTCACCTTGTTGCCTTTTTAAAAGAGTTCCCAAGTTGGATTCCACGGCTCCAAAATCTTGTGAAATTGTCTTTGAAACTTTCCATGTTAAATAACATTCCATTGAAATCTCTGGGAAATATGCCAAATTTGTTGATCCTCTCTTTCGACTCCGGTTCTTATGAAGGAGAAACTTTTCATTTTGAAAATGGAGAATTTCAGAAACTAAAGGAACTACGGTTCAAATCTTTGCATAAACTGAGGTCCATCTTTATTGATAGCGGGGCACTGCAATCTTTGGAAAAGCTTCATATGTTTGATATTCCAAAACTGAAGGCAGTACCCTCTGGCATTCAGCACTTAAGGAAACTTCAAGTTCTCGACGTCTTTTATATGCCGACTGAATTTCAGAAGAGGATTGACCCTGAAACAGGAGAAGACCATTGGATTATCAAACATGTGCCCGATGTACTTGTTGATTTGAATTTCAAGAATCAGCAAATGTACGATTTGGGTAAAAATATTTTTATGGAGCGGCCGACTTTTTACGGTTTTTTGAAGGGATGGAGGTACTTGCATAGAGTGCCAGTGGAGTTGGTGGGGATGATCCATTCCAGATCAAATTATGGAGTTGATTTTTCATATTCATTTACTCCAGACAGGTTGGGAGTTGCACCGGCGGCATTGGATTGGAAAAGTTATCCTTTTAATATGAAATCGGCTTTTTTAAATTTATTCATTCTTGCATTCTGA 2988 0.3849 MAETAVSFASQHVLPKFLEAVKMLKDLPKEVADVTDELENFQDFIRDAYKVAEVEKDHNRRERIRKRLIRLREAAFRMEDVIDDYVTCDEKQPEDPRCAALLCEAVEFIKTQIHRLQIAYQIQDVKSLVRAERDGFQNHFPTGSRSDGTRGNENFTWQKLRMDPLFIKKDEVVGFEEDIDTLKKWLTEGREERTVISIVGMAGLGKTTLSKQVFDQVHTDFECHALITVSRSYTVEGLLRDMTNKLCKERREDPPRDVATMDQMSLIEEVRNRLHNKRYVVLFDDVWNETFWDDIELALIDNKNGSRILITTRDQKVVDFCKKCLFFEVHKLQPLSNSKSLELLCKKAFGNGFHGCCPKDYEEVGLDIVRKCGCLPLAIVAIGSLLYRKCKSPSDWGLFSQHLSLELESNSELDCVKKILSLSYDDLPQNLRSCLLYFGLYPEDHEVKCGRLFQQWIAEGFVKHERGRNLEEVAEQHLMELISRSLVLVSSFTPEDKVKACHVHDSIHEMIRGKMKTTGFCHYINDFESSGIFRRLTMATSSYDLSGTSEGSQYVRSILIFTNEVLSEEFTKYLLAKYMRLKVLDFEFAALYDVPENLGCLIHLKYLSFRNTSIRSLPKSIGKLKNLESLDVRTNRVIEVPKEITKLRKLRCLFGYRISTIAVKDSLGKLTSLEKMHELRIDEDGVVIRELGKLNQLRDLRLSNFMGHHSDILCSSVNKMQLLERLDIILQYLSEPIPIDLHITSSLSKLRKLHLVAFLKEFPSWIPRLQNLVKLSLKLSMLNNIPLKSLGNMPNLLILSFDSGSYEGETFHFENGEFQKLKELRFKSLHKLRSIFIDSGALQSLEKLHMFDIPKLKAVPSGIQHLRKLQVLDVFYMPTEFQKRIDPETGEDHWIIKHVPDVLVDLNFKNQQMYDLGKNIFMERPTFYGFLKGWRYLHRVPVELVGMIHSRSNYGVDFSYSFTPDRLGVAPAALDWKSYPFNMKSAFLNLFILAF 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00878 995 Gene3D - 334 423 IPR042197 -
Viun6g00878 995 PRINTS Disease resistance protein signature 622 638 - -
Viun6g00878 995 PRINTS Disease resistance protein signature 372 386 - -
Viun6g00878 995 PRINTS Disease resistance protein signature 195 210 - -
Viun6g00878 995 PRINTS Disease resistance protein signature 273 287 - -
Viun6g00878 995 PANTHER DISEASE RESISTANCE PROTEIN RP 33 842 IPR044974 GO:0006952
Viun6g00878 995 SUPERFAMILY L domain-like 503 881 - -
Viun6g00878 995 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 438 IPR027417 -
Viun6g00878 995 Pfam NB-ARC domain 176 426 IPR002182 GO:0043531
Viun6g00878 995 Gene3D Ribonuclease Inhibitor 548 921 IPR032675 -
Viun6g00878 995 Gene3D - 4 119 - -
Viun6g00878 995 FunFam Probable disease resistance protein At1g61300 158 323 - -
Viun6g00878 995 FunFam Probable disease resistance protein At1g63360 424 512 - -
Viun6g00878 995 Gene3D - 159 326 IPR027417 -
Viun6g00878 995 Pfam Rx N-terminal domain 5 96 IPR041118 -
Viun6g00878 995 Gene3D - 424 515 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00878 Viun-Chr6 18518456 18523029 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00878 171 393 WRKY Transcription Factor Family AT5G45050 25.893 2.32e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00878 K13457 - gmx:100305454 1040.41