Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00872 ATGGCAGAAACTGCAGTGTCTTTTGCGAGTCAGCATTTGCTTCCAAAATTTTTAGAAGCTGTAAAGATGGTGAGAGATCTCCCAAAAGAAGTTGCAGAAGTTACAGATGAACTAGAGAGCTTTCAGGAATTCATCCATGAAGCAAACAAAGTGGCGGAAGCTGAAGAAGATAACAGTAAGCTCAACAGAATAAGAAAAAGGTTGATGAGGCTGAGAGAAGCATCTTTTCGCATGGAAGATGTCATCGATGACTATTTGATATGTGACGAAAAGCAATCTGAGGAAGATCCTCGATGTGCAGCTTTACTCTGTGAGGCTGTTGAGTTCATCAAAAGTCAAATCCACCGCCTTCAAATAGCGTATCAGATTCAGGATGTTAAGTCACTTGTTCGTGCAGAAAGAGATGGCTTCAAAAACCATTTTCCCATTGAACCAAGATCAGACAGTTCTAGAGGAAAGGAAAATTTCACATGGCATAAATTTCGAATGGATCCTCTCTTTATTAAGGAACATGAGGTTGTTGGCCTTGAAGGCCCTACACAAACACTGAAAAAGTGGTTGACAGAGGGAAGGGAAGAACGCACTGTGATCTCTATTGTAGGAATGGCTGGATTGGGAAAAACTACTCTTTCTAAGCAAGTCTTTGACAAGGTCCATAAACACTTTGAGTGCCATGTATTGATCACAGTGTCTCGACCGTATGCTGTTGAAGAGTTGCTGAGGACTATGATGAACGAGCTTTGCAAAGAAATAAAGGAGGATCCTCCTCGAGATATTTCAACTATGAATCAATTGTCATTGATAAAAGAAGTCAGAAACCGCTTGTGCAATAAGAGGTATGTTGTCTTGTTTGATGATGTTTGGAATGAAACATTTTGGAATGACATTGAATTGGCTATGATTGATGATAAAAATGGAAGTAGGATATTAATCACTACCCGGGAAGAGAAGGTTGCGGAGTTCTGTAAAAATTGTTTACTTTATAGGCTGCAAACTTTAAGTAAAGAAAAGTCACTGGAGTTGTTATATAAAAAGGCATTTGGGTATGGCTTTCATGGACGTTGTCTAGAAGATTATGAAGAAGCAGGTCTGGGCATTGTTAGGAAGTGTGGATATTTACCTCTAGCAATTGTAGCTATTGGTAGTCTTTTATATAGAAAATGTAAAAGTCCATCTGATTGGGCCCTGTTTAGTCAAAATCTAAGTTTAGAGTTGGAGAGCAATTTCGAGTTAGACAGTGTTAAAAAAATTTTAAGTTTGAGTTACGATGATTTACCACAGAATCTGAGGTCATGTTTGTTGTATTTCGGAATGTATCCTGAAGATTATGAAGTTAAATGTGGTAGATTAATTCAGCAGTGGATAGCTGAAGGGTTTGTGAAACACGAACTCGAAAGAAATTTAGAAGAAGTTGCAGAACAACAATTAATGGAGTTGATCAGTAGAAGCTTGGTACTAGTAGCATCATTTACCATAGATGGGAAAGTGAAAGCATGTCGTGTTCATGACTCAATGCATGAAATGATCCGTGGAAAAATTAAGAACACAGGGTTTTGTGAGTATATTGATGGACATAATCATTTGGATTCAAGCGGTATCACTCGACGCTTAACAGTGGCAACAAGCTCCAATGATTTAAGTGGATCTATGGAAGAATCAGAACATGTTCGGTCAATTCTAATTTTCGCGAATGAAACTGAAGACTTCACCAGCCGCTTGCTTGGTAAATACATACGGTTGAAGGTGCTCGATTTTGAATCTGCTCCATTGTATGAGGTTCCTGAAAATTTGGGGAGTCTAATTCACTTAAAGTATCTAAGCTTCCGGAGTACATTCATAAGAAGCCTTCCAAAATCCATTGGTAGGCTGCAGAACTTGGAGACATTAGATGTACGAACAAAAGGGGAAGTTCAGGTACCAAAGGAGATTACCAAGCTTAGAAAGCTGCGTCATCTTTTGAGTAGATCAATATCTTCCACTTCATTGAAGAACAGTCTTGGAAGCATGACGTCCCTGGAAAAGATGTATAAATTGGCAATAGATGAAGATGGAGTGGTGATTAGAGAGCTTGGAAAGCTAAATCAATTAAGGGATCTGAGGCTTGATGATGTTAGGGGAGATCATGTTGACACTCTTTGTTCCTCAATAAACGAGATGCCACTCTTGGAGCGATTAGATATCTACGTACAATATGGAGCGGTAATTGACTTGCATATTACGTTATCCTTGTGCAAACTAAGGAAGCTTCACCTGTTTGGCAGTTTAAAAGAATTCCCAAATTGGATTTCGCGACTTCAAAGTCTTGTGAAATTGTCTTTAAATCAATCCAGGTTAACTAACATTCCATTGAAATCCCTGGGAAATATGCCAAATTTGTTGTTCCTCTGTTTTGATGCATATTCTTACGAAGGAGAAACTTTGCATTTTCAAGGATTTCAGAAACTAAAGGAACTACGGCTCAAAAGTTTACCGCAATTGAGCTCCATCTTTATTGATAGCGGAGCACTGCAGTCTTTGGAAAAGCTTCTGATAATGAATATTCGACAACTGAAGGCAGTGCCCTCTGGCATTCAACACTTAGAGAAACTCCAAGTTCTCGAAATCTTTCATATGCCGATTGAATTTCTGCAGAGTATCAACCCCAATGGAGGAGAAGAGCATTGGATGATCCAACATGTGCCCCATGTAAGTTTTGTCGCAAAAAATAGTGCTATGCTATTTGCTGAGATAGCTGCTGGAATTTTTTCTTCGACTTTATACAGACGTAATGACTAA 2775 0.3885 MAETAVSFASQHLLPKFLEAVKMVRDLPKEVAEVTDELESFQEFIHEANKVAEAEEDNSKLNRIRKRLMRLREASFRMEDVIDDYLICDEKQSEEDPRCAALLCEAVEFIKSQIHRLQIAYQIQDVKSLVRAERDGFKNHFPIEPRSDSSRGKENFTWHKFRMDPLFIKEHEVVGLEGPTQTLKKWLTEGREERTVISIVGMAGLGKTTLSKQVFDKVHKHFECHVLITVSRPYAVEELLRTMMNELCKEIKEDPPRDISTMNQLSLIKEVRNRLCNKRYVVLFDDVWNETFWNDIELAMIDDKNGSRILITTREEKVAEFCKNCLLYRLQTLSKEKSLELLYKKAFGYGFHGRCLEDYEEAGLGIVRKCGYLPLAIVAIGSLLYRKCKSPSDWALFSQNLSLELESNFELDSVKKILSLSYDDLPQNLRSCLLYFGMYPEDYEVKCGRLIQQWIAEGFVKHELERNLEEVAEQQLMELISRSLVLVASFTIDGKVKACRVHDSMHEMIRGKIKNTGFCEYIDGHNHLDSSGITRRLTVATSSNDLSGSMEESEHVRSILIFANETEDFTSRLLGKYIRLKVLDFESAPLYEVPENLGSLIHLKYLSFRSTFIRSLPKSIGRLQNLETLDVRTKGEVQVPKEITKLRKLRHLLSRSISSTSLKNSLGSMTSLEKMYKLAIDEDGVVIRELGKLNQLRDLRLDDVRGDHVDTLCSSINEMPLLERLDIYVQYGAVIDLHITLSLCKLRKLHLFGSLKEFPNWISRLQSLVKLSLNQSRLTNIPLKSLGNMPNLLFLCFDAYSYEGETLHFQGFQKLKELRLKSLPQLSSIFIDSGALQSLEKLLIMNIRQLKAVPSGIQHLEKLQVLEIFHMPIEFLQSINPNGGEEHWMIQHVPHVSFVAKNSAMLFAEIAAGIFSSTLYRRND 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00872 924 PRINTS Disease resistance protein signature 274 288 - -
Viun6g00872 924 PRINTS Disease resistance protein signature 621 637 - -
Viun6g00872 924 PRINTS Disease resistance protein signature 370 384 - -
Viun6g00872 924 PRINTS Disease resistance protein signature 196 211 - -
Viun6g00872 924 Gene3D - 164 326 IPR027417 -
Viun6g00872 924 Pfam Rx N-terminal domain 5 94 IPR041118 -
Viun6g00872 924 Gene3D Ribonuclease Inhibitor 538 889 IPR032675 -
Viun6g00872 924 Gene3D - 422 512 IPR036388 -
Viun6g00872 924 PANTHER DISEASE RESISTANCE PROTEIN RP 33 839 IPR044974 GO:0006952
Viun6g00872 924 Gene3D - 332 421 IPR042197 -
Viun6g00872 924 Gene3D - 4 120 - -
Viun6g00872 924 Pfam NB-ARC domain 180 424 IPR002182 GO:0043531
Viun6g00872 924 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 436 IPR027417 -
Viun6g00872 924 FunFam Probable disease resistance protein At1g61300 160 324 - -
Viun6g00872 924 Coils Coil 51 74 - -
Viun6g00872 924 SUPERFAMILY L domain-like 500 882 - -
Viun6g00872 924 FunFam Probable disease resistance protein At1g63360 422 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00872 Viun-Chr6 18500407 18503716 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00872 172 391 WRKY Transcription Factor Family AT5G45050 25.893 8.56e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00872 K13457 - gmx:100799057 1019.22