Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00870 ATGGCAGAAAGTGTAGTGTCTTTTGCAAGTCAGCATGTGCTTCCAAAATTTCTGGAAGCTGTAAAAATGCTGAGAGATCTCCCAAAAGAAGTTGCAGAAGTTACAGATGAACTAGAAAGCTTTCAAGACTTCATCCGAGATGCAAATAAAGTGGCTGAAGCTGAAGAAGATATCAATAGACGCGATAGAATAAGAAAAAGGTTGATGAGGCTGAGAGAAGCGGCTTTTCGCATGGAAGATGTAATCGATGATTATGTGATATGTGACGAAAAACAACCTGAAGATGATCCTCGATGTGCAGCTTTACTCAGTGAGGCTATTGAGTTTATTAAAACTCAGATCCTTCGCCTTCAAATAGCGTATCAGATTCAGGATGTTAAGTCACTTGTTCGAGCCGAAAGAGATGGCTTCCAAAACCATTTTCCTATAGAACCAAGATTACACAGTTGTATAGGAAATGAACATTTCACATGGCATAAACTTCGAATGGATCCTCTTTTTATTCAGAAGGATGAGGTTGTTGGCCTTGATGGCCCTATACAAACACTGAAAAAGTGGTTGACAGAGGGTAGAGAAGAACGCACTGTCATCTCTGTTGTAGGAATGGCAGGATTGGGAAAAACCACTCTTTCTAAGCAAGTCTTTGACAGGGTACACACAGACTTTGAGTGTCATGCATTGATCACAGTGTCTCGGTCCTATACTGTTGAAGGGTTGCTGAGGGATTTGACGAACAAGCTTTGTAAAGAAAGACTGGAGGATCCTCCTCGAGATGTTGCAACTATGAATCAAATGTCACTGATAGAAGAAGTCAGAAATCGTTTGAACAATAAGAGGTATGTTGTCTTGTTTGATGACGTATGGAATAAAACATTTTGGGATGACATTGAATTGGCTCTGATCGACAATAAAAATGGAAGTAGGATATTAATCACTACCCGGGATGAGAAGGTCGTGGATTTATGTAAGAAATGTTTATTTTTTGAGGTACATAAGCTACAACCATTAAGTAAAGAAAAATCACTGGAGTTGTTATGTAAGAAGGCATTTGGGTATGGTTTTGATGGAAGCTGTCCAAAAGATTATGAAGAAGTAGGTCTGGAAATTGTTAGAAAGTGTGAGTGCTTACCTTTATCAATTGTGGCCATCGGTAGTCTTTTAAACAGAAAATGTAAAAGTCCATCTGAATGGGGCCTGTTTAGTCAAAATCTAAGTTTAGAGTTGGAGAGCAATTCCGAGTTAGACAGTGTAAAAAAAATTTTAGGCTTGAGTTACGATGATTTGCCACAGAATCTGAGGTCATGTTTATTGTATTTCGGAATGTATCCAGAAAATTACGAAGTTAAATGTGATAGATTAATTCAGATGTGGATAGCTGAAGGGTTTGTCAAACATGAAAGTGGAAGAAATTTAGAAGAAGTTGCACAACAACAATTAATAGAGTTGATTAGTAGAAGTTTGGTGCTAGTATCATCATTTACCATAGATAACAGAGCAAAATTATGTCGTGTTCATGACTCAATACATGAAATGATCCGTGGAAAAACTAAGAATACAGGGTTCTGTGAGTATATTGATGTGAATAATCACTTGGAGTCAAGTGGTCCCATTCGACGCTTAACAATAGCAACAAGTTCCAATGATTTAAGTGGAACTATAGAAGGATCACATCATATTCGGTCAATTATAATTTTCGGGAGGAGGGAAGTCTTATCTGAACAATTCACCAGCCACTTGCTTTCAAAATACACGCGGTTGAAGGTACTTGATTTTGGATATGCTCCATTATATGATGTTCCTGAAAATTTGGGGAGTTTAATTCACTTAAAGTATCTAAGCTTCTGGAGTACATTCATAAGAAGCCTTCCGAAATCCATTGGTAAGCTGCAGAACTTGGAGACCTTAGATGTACGAGCAAACAGGGAGATTGAGGTACCAAAGGAGATTACGAAGCTTAGAAAACTACGTTGTCTTTTGGGTAACCGAATGTCTGCCATTGCAGTGAAGGATAGTATTGGAAGCATGACATCCCTCCAAATGATGCATATATTGATAGATCCAGATGGAGTGGTGATTAGAGAGCTTGGAAAGCTAAAGCAATTGAGGGATATGAGACTTTCTAATGTTATGGGACATCATTCTGATACTCTTTCTTCCTCAATAAACCAGATGCAACTCTTGGAGCGACTAGATATCTTCGTACAACACTTGAGTGAACCAATTGACTTGCACATTACATCATCCTTGTCTAAACTGAGGAAGCTTCACCTGTATGCCAATTTAAAAGAATTCCCAAATTGGATTCCGCGACTCCAAAATCTTGTGAAATTGTCTTTGGTTCAGTCCAGGCTAACTAACATTCCATTGATATCTATAGGAAATATGGCAAATTTGTTGATCCTCTCTTTCGGCTCCACTTCGTACGAAGGAGAAACTTTGCATTTTGAAAATGGAGGATTTCAGAAACTAAAGGAACTAGAGCTCCAACGTTTGCATCAATTGAGCTCCATTTTTATTGATAGCGGAGCACTGCAATCTTTGGAAAAGCTTCAGATAATGAATATTCCAGAACTGAAGGCAGTACCCTCTGGCATTCAAAACTTAAAGAAACTCCAAGTTCTCGACATCTTATATATGCCAACTGAGTTTCTGCAGAGGATTGACCCCAATGGAGGAGAAGATTATTTCATGATCAAACATGTGCCCCATCTACATTTTGTCACCAAAAATCGTGCTTTTCTGTTGGCCGAGAGAGCAGCTAATATTCTTTGTGGGGTTATAGAGTAA 2787 0.385 MAESVVSFASQHVLPKFLEAVKMLRDLPKEVAEVTDELESFQDFIRDANKVAEAEEDINRRDRIRKRLMRLREAAFRMEDVIDDYVICDEKQPEDDPRCAALLSEAIEFIKTQILRLQIAYQIQDVKSLVRAERDGFQNHFPIEPRLHSCIGNEHFTWHKLRMDPLFIQKDEVVGLDGPIQTLKKWLTEGREERTVISVVGMAGLGKTTLSKQVFDRVHTDFECHALITVSRSYTVEGLLRDLTNKLCKERLEDPPRDVATMNQMSLIEEVRNRLNNKRYVVLFDDVWNKTFWDDIELALIDNKNGSRILITTRDEKVVDLCKKCLFFEVHKLQPLSKEKSLELLCKKAFGYGFDGSCPKDYEEVGLEIVRKCECLPLSIVAIGSLLNRKCKSPSEWGLFSQNLSLELESNSELDSVKKILGLSYDDLPQNLRSCLLYFGMYPENYEVKCDRLIQMWIAEGFVKHESGRNLEEVAQQQLIELISRSLVLVSSFTIDNRAKLCRVHDSIHEMIRGKTKNTGFCEYIDVNNHLESSGPIRRLTIATSSNDLSGTIEGSHHIRSIIIFGRREVLSEQFTSHLLSKYTRLKVLDFGYAPLYDVPENLGSLIHLKYLSFWSTFIRSLPKSIGKLQNLETLDVRANREIEVPKEITKLRKLRCLLGNRMSAIAVKDSIGSMTSLQMMHILIDPDGVVIRELGKLKQLRDMRLSNVMGHHSDTLSSSINQMQLLERLDIFVQHLSEPIDLHITSSLSKLRKLHLYANLKEFPNWIPRLQNLVKLSLVQSRLTNIPLISIGNMANLLILSFGSTSYEGETLHFENGGFQKLKELELQRLHQLSSIFIDSGALQSLEKLQIMNIPELKAVPSGIQNLKKLQVLDILYMPTEFLQRIDPNGGEDYFMIKHVPHLHFVTKNRAFLLAERAANILCGVIE 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00870 928 SUPERFAMILY L domain-like 503 883 - -
Viun6g00870 928 Gene3D Ribonuclease Inhibitor 688 888 IPR032675 -
Viun6g00870 928 Gene3D - 6 120 - -
Viun6g00870 928 Gene3D - 335 424 IPR042197 -
Viun6g00870 928 PANTHER DISEASE RESISTANCE PROTEIN RP 32 851 IPR044974 GO:0006952
Viun6g00870 928 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 439 IPR027417 -
Viun6g00870 928 CDD RX-CC_like 2 128 IPR038005 -
Viun6g00870 928 Gene3D - 163 326 IPR027417 -
Viun6g00870 928 Gene3D - 425 516 IPR036388 -
Viun6g00870 928 FunFam Probable disease resistance protein At1g61300 159 324 - -
Viun6g00870 928 Gene3D Ribonuclease Inhibitor 545 684 IPR032675 -
Viun6g00870 928 FunFam Probable disease resistance protein At1g63360 425 513 - -
Viun6g00870 928 Pfam NB-ARC domain 179 427 IPR002182 GO:0043531
Viun6g00870 928 Pfam Rx N-terminal domain 5 93 IPR041118 -
Viun6g00870 928 PRINTS Disease resistance protein signature 196 211 - -
Viun6g00870 928 PRINTS Disease resistance protein signature 627 643 - -
Viun6g00870 928 PRINTS Disease resistance protein signature 274 288 - -
Viun6g00870 928 PRINTS Disease resistance protein signature 373 387 - -
Viun6g00870 928 Coils Coil 54 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00870 Viun-Chr6 18478561 18482199 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00870 172 519 WRKY Transcription Factor Family AT5G45050 25.429 1.08e-14 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00870 K13457 - gmx:100806153 1048.11