Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00860 ATGCCACAGAGAAAAGGTTGCAGTATTTTTAATGAGCCTTGTTTTGTCGCCAAGAAATTCTTGGCAAGACCTCAGCATGAGGGTGTTGGAGCTGTTGTTAGAAGAAGCATAGGAAGGTTTGAGCTCAAGTACTTTGATCCCTTCCTTATGTTGGATGAATTCTCAGTTACTGCTCCTGCTGGTTTTCCTGATCATCCTCACAGAGGCTTTGAGACAGTCACATACATGTTGCAGGGAGCTATCACGCATGAAGATTTTGAAGGACATAAAGGGACTATAGAAGCTGGTGACTTGCAATGGATGACTGCTGGTAGAGGGATTGTGCACTCAGAAATGCCTGTTGCACAAGGAACACAAAAGGGTCTTCAATTGTGGATCAACCTTGCTTCCAAATATAAAATGATTGAACCAAGGTATCAAGAAGTGTTGAGTAAGGACATAGCAGAAGGTGAGGATGATGGTGTGAAGGTGAGAGTTATAGCTGGTGAATCACTAGGGATAAAGTCTCCAATCTACACAATGACTCCAACCATGTTCTTGGATTTCTCTCTCAAACCTGGAGCACACTTGCAGCAACCTATACCAGAAACTTGGAATGCTTTTGTGTACATATTGGAAGGAGAGGGTATCTTTGGAAACATGAAATCTCAACCTTCAAATTCTCACCATATTCTTCTTCTTGCTCATGGTGATGGCCTAGAGGCATGGAACAAGTCTTCTAAGCTCCTTAGGTTCATATTGGTTGGAGGAGAACCTTTGGAGGAACCTCTAGTGCAATTTGGACCCTTTGTGATGAACACTCAGGAAGAGATTGACCAAACCATTAATGATTTTGAGAACTTTGCTAATGGATTTGAGAAAGCAAGAGATTGGAGATCTGAAAAGGAAATGGATTAA 897 0.4192 MPQRKGCSIFNEPCFVAKKFLARPQHEGVGAVVRRSIGRFELKYFDPFLMLDEFSVTAPAGFPDHPHRGFETVTYMLQGAITHEDFEGHKGTIEAGDLQWMTAGRGIVHSEMPVAQGTQKGLQLWINLASKYKMIEPRYQEVLSKDIAEGEDDGVKVRVIAGESLGIKSPIYTMTPTMFLDFSLKPGAHLQQPIPETWNAFVYILEGEGIFGNMKSQPSNSHHILLLAHGDGLEAWNKSSKLLRFILVGGEPLEEPLVQFGPFVMNTQEEIDQTINDFENFANGFEKARDWRSEKEMD 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00860 298 Gene3D Jelly Rolls 27 279 IPR014710 -
Viun6g00860 298 CDD cupin_pirin_C 176 252 - -
Viun6g00860 298 SUPERFAMILY RmlC-like cupins 16 293 IPR011051 -
Viun6g00860 298 PANTHER PIRIN-RELATED 8 295 IPR012093 -
Viun6g00860 298 PIRSF Pirin 12 292 IPR012093 -
Viun6g00860 298 CDD cupin_pirin_N 31 128 - -
Viun6g00860 298 FunFam pirin 27 158 - -
Viun6g00860 298 Pfam Pirin C-terminal cupin domain 179 283 IPR008778 -
Viun6g00860 298 Gene3D Jelly Rolls 148 253 IPR014710 -
Viun6g00860 298 Pfam Pirin 33 126 IPR003829 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00860 Viun-Chr6 18394799 18398407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00860 13 289 Calmodulin-binding Proteins AT3G59220 58.781 2.35e-121 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00860 K06911 - gmx:100802484 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g00860 6 18394799 18398407 Viun6g00860 6 18394799 18398407 ECH
Viun6g00860 6 18394799 18398407 Viun8g02917 8 36919633 36922579 PCT