Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00854 ATGGTACCACTGAGTCTGATCTCTGAGTGTGCCTTGAATTTGGCTAGTGAACATGCTCAAGTGGTGCCTATTTCACTTTTTGTGGCTGTTCTATGCCTTTGTTTGGTCATTGGTCACTTGCTTGAAGAAAATCGATGGATTAATGAATCCATAGTTGCTATCATAATAGGAATCATTGCTGGAATTATACTGTTGTTGATCACCAAAGGAAAGAGTTCTCACATCCTCACATTTAATGAAGAACTATTCTTCATATATCTCCTTCCTCCCATAATATTCAATGCAGGATTTCAGGTGAAGAAGAAACAATTCTTCCATAACTTTTTAACCATCATGATGTTTGGTGTCATCGGTGTTTTCATTTCAACCTTTGTTATTACTATCGGCAGCTGGTGGATATTCCCTAAGTTGAACTTGCTTGGCCTGTCAGGGAAAGATTATCTTGCTATAGGAACAATTTTCTCAGCAACGGACACAGTTTGTACCCTGCAGGTTCTGCATCAAGATGAGACTCCTTTACTATACAGCCTAGTCTTTGGGGAAGGAGTGGTAAATGATGCCACATCAGTTGTTCTCTTCAATGCAGTGCAAAAGCTTGATGTTTCAAAATTTAGCAGCAAGACATTCCGGTTTATTGGAGATTTCTTGTATCTATTCGGGTTAAGCACTGGTCTTGGAGTTCTAGCTGGCCTCCTCACATCATATATCTTGAAAGCCTTATGCTTTGGAAGACATTCAAGTGTTCGTGAAATTGCATTGATGATATTAATGTCATACCTATCCTACATGTTGGCAGAGCTATGTGATCTAAGTGGAATCATCACTGTTTTCTTTTGTGGAATACTCATGTCACATTATGCATGGTATAATGTGACTGAAACTTCAAGAATCACAACCAGGCATGTGTTTGCAACAATGTCATTTATTGCAGAAACCTTCATATTCCTATATGTGGGCATGGATGCCCTTGACATTGAGAAGTGGAAGATGACTAAATTAAGTTACGGAAGTTTGCTGGGGATATACAGTTCCTTAATCCTATTGATATTGCTTGGGCGTGCTGCATTTGTTTTCCCTCTCTCTGCTATTGCCAATTATACGAACACACGTGCTAGTTCTGACCAAGCATCACACATCACTTTTAGACAGCAGATAATCGTTTGGTGGGCAGGGCTAATGAGGGGAGCTGTCTCCATTGCTCTGGCTTTCAAACAGTTCACATATTCTGGAGTTACTTCTGATCCACTTAAAGCAACAATGATTACCAACACCATTATTGTTGTGCTTTTCAGCACACTGGTGTTTGGTTTTCTCACAAAACCATTAATGAGATATCTGCTACCCCATGCACCTACAAGGAAAAACATCATCAATGAAGAATCAGGTCCACCAAGTGAGGACTTGAATCTACCTTTGCTATCCCTTGAGGAGTCTGCAGCCACCAACATTAGCCGCGCAAAGGAAAGTTTGTCCATGTTAATAGAAAGTCCTGTGTTCACCATACATCACTATTGGAGGAGATTCGATGATGCCTACATGAGACCTTTTTTTGGGGGACCTCATCATAACCAATCACAGTGCTAG 1584 0.404 MVPLSLISECALNLASEHAQVVPISLFVAVLCLCLVIGHLLEENRWINESIVAIIIGIIAGIILLLITKGKSSHILTFNEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISTFVITIGSWWIFPKLNLLGLSGKDYLAIGTIFSATDTVCTLQVLHQDETPLLYSLVFGEGVVNDATSVVLFNAVQKLDVSKFSSKTFRFIGDFLYLFGLSTGLGVLAGLLTSYILKALCFGRHSSVREIALMILMSYLSYMLAELCDLSGIITVFFCGILMSHYAWYNVTETSRITTRHVFATMSFIAETFIFLYVGMDALDIEKWKMTKLSYGSLLGIYSSLILLILLGRAAFVFPLSAIANYTNTRASSDQASHITFRQQIIVWWAGLMRGAVSIALAFKQFTYSGVTSDPLKATMITNTIIVVLFSTLVFGFLTKPLMRYLLPHAPTRKNIINEESGPPSEDLNLPLLSLEESAATNISRAKESLSMLIESPVFTIHHYWRRFDDAYMRPFFGGPHHNQSQC 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00854 527 PRINTS Na+/H+ exchanger signature 82 93 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Viun6g00854 527 PRINTS Na+/H+ exchanger signature 151 161 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Viun6g00854 527 PRINTS Na+/H+ exchanger signature 96 110 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Viun6g00854 527 PRINTS Na+/H+ exchanger signature 111 119 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Viun6g00854 527 Gene3D - 143 195 - -
Viun6g00854 527 PANTHER SODIUM/HYDROGEN EXCHANGER 17 520 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Viun6g00854 527 NCBIfam sodium/hydrogen exchanger 3 23 460 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Viun6g00854 527 Pfam Sodium/hydrogen exchanger family 28 444 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00854 Viun-Chr6 18284207 18289215 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00854 13 527 Antiporters AT5G55470 69.482 0.0 753
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00854 - - gmx:100813332 871.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g00854 6 18284207 18289215 Viun6g00854 6 18284207 18289215 ECH