Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00851 ATGCAAGTTGTTGCGTGGAGGTTTGATCTTTCCTATGTGAGGCCTGAGATATCGGTGTTGTCAAAGGATAGGAGATGGATTAAACTTGAGAAGCCTAGGAAGAGCTATGAGGAAACCATAAGATCTATTTTGATCACCATTCACTTCATGGGTTATGTGAAGAGGAATCCTGACTCATCTGCCAAGTCTGCGTGGGATAGCTTGAGTAAGAATAAGGAGTTTAGATCTTATGAGGTTATGCCTTCGCAAAATGATATATTAAATCATATGACTTTAATGGGTGAAGCTGCCAAAAGAGATGCTGACTTAGCAAAGTCCAAGCTTTTCCTCATGGTTCGGGAAGATAAAGATAAGCTGAAGATTAAGAAACTTTCTGATGAGGAAGTTAAAGATTTAGCCCGGCCTGGATTTATAACTGATGATACTGACAATGATTTGATTGATGAAATTGGTGAAGATTCAGATGGAGAGGATGGGTTGTTTGATTCTGTTTGTGCGATTTGTGACAATGGTGGCGAACTTTTGTGTTGTGATGGAAAGTGCATGAGGTCATTTCATGCTAATGAGGAGGATGGTGAAGAATCTGCTTGTGCCTCTCTTGGTTTTAGCCAGAAGCAAGTTGATGATATCCAGAACTTCTACTGTAAGAATTGTGAATATAATCAACATCAGTGCTTTGCATGTGGTACTCTAGGCTGCTCTGATAAATTTTCTGGTGCTGAGGTCTTCAAATGTGCGTCTGCAACCTGTGGTTTCTTTTACCATCCACAATGTGTTGCAAAGTTACTTCACCGGGTAGTTGAGGAGGCTCCAGATCCGAAGGAACTTGAGAGAAATATTGCTGAAGGAGGAGCTTTTACTTGTCCTACTCACTACTGTTGTGTCTGTAAAGGAATGGAAGACAAAAATGAACATGATTTTCACTTTGCTGTTTGTAGGCGTTGCCCCAAGTCCTACCATCGTAAATGCTTGCCAAGGAAGATCGCATTTGATGACATAGAGGATGAAGATATTGTAACAAGGGCTTGGGAAGACCTTCTACCCAACAATCGCATTCTTATATATTGTTTAAAACATGAGATTGATGGTGAATTTGGGACGCCTGTAAGGGATCATATAAAGTTTCCCAATGTAAAGGCTTCTGTTCGAGAAGTTATTACTGAGGACAATGAAAAGCCTGCAAACAAAGAGAGGGTTATATTGGATAAGAACAGCATTGTCTCTGAAAGTTTAATTGGCAAAAAGGCTGCTTTGAAATTTTCTAATAAACTGTCTGGTAAAATGTCTTCTGGAAAAGTGCTTGACAAGAAGTCTGAAAAGATTTCTGGATCAAATATCTTAAGGAAGAAAACAAATGAGGCATCAAAAAGGGGTTTGAATGAAAGTAAGAGGCCATTAGTCCCAAAGGAAACCAGAAAGTCTGAGGGTGCAGAAAATAAGTCCTCATTGGGTGCAAAATTATTTGCCTTTTGGCAAAATGGTTCTGAGCAAATTAATTCTGGTAATAAGGTTAATAATGTGGCTAATAATTCCCAGCATGTTAAGCCTACTAAAAAGTTGAGTAGTGCATTACCCTCATTAGATGAAGATGCAGAGAGGAGATTGGTGGCTATGTTTAAAGAAGCTACTTCATCAGTTACTTTGGAGGATGTTGTAAAAGAGCACAATTTTGTTAGTACTCATACCCACTCATTGAAAAATGTTGTGGAGAAAACCATTACGTTGGGGAAATTGGAAGGCTCAGTTGAGGCTGTTCGAACAGCTCTAAGGATGCTAGAGGGTGGGCACAATGTTCGGGATGCTGCAGCTGTTTGTGGTCCTGATGTTCTTAACCAAATATTTAAGTGGAAGGATAAGCTGAAAGTATATCTTGCACCTGTTCTATATGGTAATCGCTACACATCGTTTGGCCGCCATTTTACACAAATTGAAAAGCTGGAAGGGATTGTTGATAAACTGCATTGGTATGTTCAGAATGGTGATACAATTGTGGACTTCTGTTGTGGTGCTAATGACTTCAGCATTCTTATGAAGAAAAAGCTTGAAGAGACTGGAAAGAGATGCTCATACAAAAACTTTGATCTACTTCCGACGAAGAATGATTTTAATTTTGAGATGCGAGATTGGATGTCTGTACAAACAAAGGAGTTGCCTACAGGGTCAAAGTTGATCATGGGCTTAAATCCCCCCTTTGGACTAAAGGCAGCACTGGCTAACAAGTTTATAGACAAAGCTCTCGAGTTCAGACCGAAGCTCATGATTCTCATTGTACCATCAGAGACACAGAGGCTAGATGAGAAACGGCATCCGTATGATCTTGTCTGGGAGGACGAGAGGTTTCTATCGGGCAAGTCATTTTATCTACCTGGATCAGTTGATACTAACGACAGGCAAATGGATCAGTGGAATGTAAAGCCCCCCCCACTGTACCTTTGGAGTCGTCCTGATTGGACTAGCAAGCACAAGGCCATAGCTCGGGAGCATGATCACCTGATCCGGGAGCGTGAGGTGTCAAAAATGGAAAGCTTTGGTGAAAAAGAATCACCTTCCAGTCATACTAAGGAGGATAATTCTGGTGTCAATATCATGCGAAGTGATGACATCTTGAATTCAATCGCTGCACCTATCAGTGAAGGTCATGTGGGATACTCACCACATGGAAGTGTTGATCGAGGGAGTCAAGAGAGACAGGAATATAGAGTGAGCGATGCTGAGAATACCTCATGGAAGAGGAAACGACCTGAGGAAAATGATGGAAGAGGACTAGGTGTGACCTCACCACTCAATTCAATTGATGTGAGATCCTCAGTTGAACGTTTTCCGCCTAAACATGACGTGCCACCTCCAGATTTTGAGGTTGTTGATAAAGGTTATAGGAATTTGGAGCCCACCTCTTCCTCACATACTAGAGGAGCCTATAGCGGGACCCAAAATTGGCCAGGTGATGCCAATCCCCTTTATGATTCTGGGGTCACAGGCGTAGATGGACGCCATGGCAGCCTTATGAGAGACACGGGATATAGACTCTATGTGAGGGAGAATGAGAGCAACCTTAGGGAACATATTCGGCAATACGGGCTTCAGAATCCTAATAATGTGACTAGTAATTATGTATCATCTGTTCACGATCCTGCTTACGGCCACCATGAGGGATATTATCCAGCCCATGGTTCATTATATGAGTCTCCTTATGTCATGAATGCACCAGCCATGCAGCGATATGCACCTCGTCTGGACGAATTAAACCATGTAAGGATGGATCCTCTGGGGTCTGAGCCTCCTCCTATGGTTGGACGTGGTGTGCCCCAACCTGGATATGGGAGTTGGATGCCAGGTTTTGCAGGTGGTTCTCACCACCTCTATTCACGACAGAATTCAGCAGACCGCTTTAACCAGTAG 3399 0.4228 MQVVAWRFDLSYVRPEISVLSKDRRWIKLEKPRKSYEETIRSILITIHFMGYVKRNPDSSAKSAWDSLSKNKEFRSYEVMPSQNDILNHMTLMGEAAKRDADLAKSKLFLMVREDKDKLKIKKLSDEEVKDLARPGFITDDTDNDLIDEIGEDSDGEDGLFDSVCAICDNGGELLCCDGKCMRSFHANEEDGEESACASLGFSQKQVDDIQNFYCKNCEYNQHQCFACGTLGCSDKFSGAEVFKCASATCGFFYHPQCVAKLLHRVVEEAPDPKELERNIAEGGAFTCPTHYCCVCKGMEDKNEHDFHFAVCRRCPKSYHRKCLPRKIAFDDIEDEDIVTRAWEDLLPNNRILIYCLKHEIDGEFGTPVRDHIKFPNVKASVREVITEDNEKPANKERVILDKNSIVSESLIGKKAALKFSNKLSGKMSSGKVLDKKSEKISGSNILRKKTNEASKRGLNESKRPLVPKETRKSEGAENKSSLGAKLFAFWQNGSEQINSGNKVNNVANNSQHVKPTKKLSSALPSLDEDAERRLVAMFKEATSSVTLEDVVKEHNFVSTHTHSLKNVVEKTITLGKLEGSVEAVRTALRMLEGGHNVRDAAAVCGPDVLNQIFKWKDKLKVYLAPVLYGNRYTSFGRHFTQIEKLEGIVDKLHWYVQNGDTIVDFCCGANDFSILMKKKLEETGKRCSYKNFDLLPTKNDFNFEMRDWMSVQTKELPTGSKLIMGLNPPFGLKAALANKFIDKALEFRPKLMILIVPSETQRLDEKRHPYDLVWEDERFLSGKSFYLPGSVDTNDRQMDQWNVKPPPLYLWSRPDWTSKHKAIAREHDHLIREREVSKMESFGEKESPSSHTKEDNSGVNIMRSDDILNSIAAPISEGHVGYSPHGSVDRGSQERQEYRVSDAENTSWKRKRPEENDGRGLGVTSPLNSIDVRSSVERFPPKHDVPPPDFEVVDKGYRNLEPTSSSHTRGAYSGTQNWPGDANPLYDSGVTGVDGRHGSLMRDTGYRLYVRENESNLREHIRQYGLQNPNNVTSNYVSSVHDPAYGHHEGYYPAHGSLYESPYVMNAPAMQRYAPRLDELNHVRMDPLGSEPPPMVGRGVPQPGYGSWMPGFAGGSHHLYSRQNSADRFNQ 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00851 1132 CDD PHD2_NSD 224 291 - -
Viun6g00851 1132 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 222 343 IPR013083 -
Viun6g00851 1132 MobiDBLite consensus disorder prediction 891 919 - -
Viun6g00851 1132 MobiDBLite consensus disorder prediction 835 861 - -
Viun6g00851 1132 MobiDBLite consensus disorder prediction 962 983 - -
Viun6g00851 1132 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 221 IPR013083 -
Viun6g00851 1132 MobiDBLite consensus disorder prediction 835 853 - -
Viun6g00851 1132 MobiDBLite consensus disorder prediction 962 984 - -
Viun6g00851 1132 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 2 846 - -
Viun6g00851 1132 SMART PHD_3 164 219 IPR001965 -
Viun6g00851 1132 SMART PHD_3 293 360 IPR001965 -
Viun6g00851 1132 SMART PHD_3 224 292 IPR001965 -
Viun6g00851 1132 MobiDBLite consensus disorder prediction 441 479 - -
Viun6g00851 1132 MobiDBLite consensus disorder prediction 877 930 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00851 Viun-Chr6 18242627 18258641 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00851 162 265 PHD Transcription Factor Family AT3G14980 32.692 1.60e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00851 - - gmx:100803073 1783.84