Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00850 ATGGCATCTTCAGACGACGAGGGAGAGTCTCAGCCACTATCTGTGTCAAATTACTATTTTGAAGATGACAAAGATGTGCCGGTGTGTTTTTCCGTGTTACCAATTGTGTGGAGTGAGTCAGAGAGTCCAGTTGGCAAGAAAATACAGGTGTTTTTGCGTGGTTTTGCAGATAATGGGCTGCAGAAGATTTTCATGCAAGTTGTTGCGTGGAGGTTTGATCTTTCCTATGTGAGGCCTGAGATATCGGTGTTGTCAAAGGATAGGAGATGGATTAAACTTGAGAAGCCTAGGAAGAGCTATGAGGAAACCATAAGATCTATTTTGATCACCATTCACTTCATGGGTTATGTGAAGAGGAATCCTGACTCATCTGCCAAGTCTGCGTGGGATAGCTTGAGTAAGAATAAGGAGTTTAGATCTTATGAGGTTATGCCTTCGCAAAATGATATATTAAATCATATGACTTTAATGGGTGAAGCTGCCAAAAGAGATGCTGACTTAGCAAAGTCCAAGCTTTTCCTCATGGTTCGGGAAGATAAAGATAAGCTGAAGATTAAGAAACTTTCTGATGAGGAAGTTAAAGATTTAGCCCGGCCTGGATTTATAACTGATGATACTGACAATGATTTGATTGATGAAATTGGTGAAGATTCAGATGGAGAGGATGGGTTGTTTGATTCTGTTTGTGCGATTTGTGACAATGGTGGCGAACTTTTGTGTTGTGATGGAAAGTGCATGAGGTCATTTCATGCTAATGAGGAGGATGGTGAAGAATCTGCTTGTGCCTCTCTTGGTTTTAGCCAGAAGCAAGTTGATGATATCCAGAACTTCTACTGTAAGAATTGTGAATATAATCAACATCAGTGCTTTGCATGTGGTACTCTAGGCTGCTCTGATAAATTTTCTGGTGCTGAGGTCTTCAAATGTGCGTCTGCAACCTGTGGTTTCTTTTACCATCCACAATGTGTTGCAAAGTTACTTCACCGGGTAGTTGAGGAGGCTCCAGATCCGAAGGAACTTGAGAGAAATATTGCTGAAGGAGGAGCTTTTACTTGTCCTACTCACTACTGTTGTGTCTGTAAAGGAATGGAAGACAAAAATGAACATGATTTTCACTTTGCTGTTTGTAGGCGTTGCCCCAAGTCCTACCATCGTAAATGCTTGCCAAGGAAGATCGCATTTGATGACATAGAGGATGAAGATATTGTAACAAGGGCTTGGGAAGACCTTCTACCCAACAATCGCATTCTTATATATTGTTTAAAACATGAGATTGATGGTGAATTTGGGACGCCTGTAAGGGATCATATAAAGTTTCCCAATGTAAAGGCTTCTGTTCGAGAAGTTATTACTGAGGACAATGAAAAGCCTGCAAACAAAGAGAGGGTTATATTGGATAAGAACAGCATTGTCTCTGAAAGTTTAATTGGCAAAAAGGCTGCTTTGAAATTTTCTAATAAACTGTCTGGTAAAATGTCTTCTGGAAAAGTGCTTGACAAGAAGTCTGAAAAGATTTCTGGATCAAATATCTTAAGGAAGAAAACAAATGAGGCATCAAAAAGGGGTTTGAATGAAAGTAAGAGGCCATTAGTCCCAAAGGAAACCAGAAAGTCTGAGGGTGCAGAAAATAAGTCCTCATTGGGTGCAAAATTATTTGCCTTTTGGCAAAATGGTTCTGAGCAAATTAATTCTGGTAATAAGGTTAATAATGTGGCTAATAATTCCCAGCATGTTAAGCCTACTAAAAAGTTGAGTAGTGCATTACCCTCATTAGATGAAGATGCAGAGAGGAGATTGGTGGCTATGTTTAAAGAAGCTACTTCATCAGTTACTTTGGAGGATGTTGTAAAAGAGCACAATTTTGTTAGTACTCATACCCACTCATTGAAAAATGTTGTGGAGAAAACCATTACGTTGGGGAAATTGGAAGGCTCAGTTGAGGCTGTTCGAACAGCTCTAAGGATGCTAGAGGGTGGGCACAATGTTCGGGATGCTGCAGCTGTTTGTGGTCCTGATGTTCTTAACCAAATATTTAAGTGGAAGGATAAGCTGAAAGTATATCTTGCACCTGTTCTATATGGTAATCGCTACACATCGTTTGGCCGCCATTTTACACAAATTGAAAAGCTGGAAGGGATTGTTGATAAACTGCATTGGTATGTTCAGAATGGTGATACAATTGTGGACTTCTGTTGTGGTGCTAATGACTTCAGCATTCTTATGAAGAAAAAGCTTGAAGAGACTGGAAAGAGATGCTCATACAAAAACTTTGATCTACTTCCGACGAAGAATGATTTTAATTTTGAGATGCGAGATTGGATGTCTGTACAAACAAAGGAGTTGCCTACAGGGTCAAAGTTGATCATGGGCTTAAATCCCCCCTTTGGACTAAAGGCAGCACTGGCTAACAAGTTTATAGACAAAGCTCTCGAGTTCAGACCGAAGCTCATGATTCTCATTGTACCATCAGAGACACAGAGGCTAGATGAGAAACGGCATCCGTATGATCTTGTCTGGGAGGACGAGAGGTTTCTATCGGGCAAGTCATTTTATCTACCTGGATCAGTTGATACTAACGACAGGCAAATGGATCAGTGGAATGTAAAGCCCCCCCCACTGTACCTTTGGAGTCGTCCTGATTGGACTAGCAAGCACAAGGCCATAGCTCGGGAGCATGATCACCTGATCCGGGAGCGTGAGGTGTCAAAAATGGAAAGCTTTGGTGAAAAAGAATCACCTTCCAGTCATACTAAGGAGGATAATTCTGGTGTCAATATCATGCGAAGTGATGACATCTTGAATTCAATCGCTGCACCTATCAGTGAAGGTCATGTGGGATACTCACCACATGGAAGTGTTGATCGAGGGAGTCAAGAGAGACAGGAATATAGAGTGAGCGATGCTGAGAATACCTCATGGAAGAGGAAACGACCTGAGGAAAATGATGGAAGAGGACTAGGTGTGACCTCACCACTCAATTCAATTGATGTGAGATCCTCAGTTGAACGTTTTCCGCCTAAACATGACGTGCCACCTCCAGATTTTGAGGTTGTTGATAAAGGTTATAGGAATTTGGAGCCCACCTCTTCCTCACATACTAGAGGAGCCTATAGCGGGACCCAAAATTGGCCAGGTGATGCCAATCCCCTTTATGATTCTGGGGTCACAGGCGTAGATGGACGCCATGGCAGCCTTATGAGAGACACGGGATATAGACTCTATGTGAGGGAGAATGAGAGCAACCTTAGGGAACATATTCGGCAATACGGGCTTCAGAATCCTAATAATGTGACTAGTAATTATGTATCATCTGTTCACGATCCTGCTTACGGCCACCATGAGGGATATTATCCAGCCCATGGTTCATTATATGAGTCTCCTTATGTCATGAATGCACCAGCCATGCAGCGATATGCACCTCGTCTGGACGAATTAAACCATGTAAGGATGGATCCTCTGGGGTCTGAGCCTCCTCCTATGGTTGGACGTGGTGTGCCCCAACCTGGATATGGGAGTTGGATGCCAGGTTTTGCAGGTGGTTCTCACCACCTCTATTCACGACAGAATTCAGCAGACCGCTTTAACCAGTAG 3591 0.4236 MASSDDEGESQPLSVSNYYFEDDKDVPVCFSVLPIVWSESESPVGKKIQVFLRGFADNGLQKIFMQVVAWRFDLSYVRPEISVLSKDRRWIKLEKPRKSYEETIRSILITIHFMGYVKRNPDSSAKSAWDSLSKNKEFRSYEVMPSQNDILNHMTLMGEAAKRDADLAKSKLFLMVREDKDKLKIKKLSDEEVKDLARPGFITDDTDNDLIDEIGEDSDGEDGLFDSVCAICDNGGELLCCDGKCMRSFHANEEDGEESACASLGFSQKQVDDIQNFYCKNCEYNQHQCFACGTLGCSDKFSGAEVFKCASATCGFFYHPQCVAKLLHRVVEEAPDPKELERNIAEGGAFTCPTHYCCVCKGMEDKNEHDFHFAVCRRCPKSYHRKCLPRKIAFDDIEDEDIVTRAWEDLLPNNRILIYCLKHEIDGEFGTPVRDHIKFPNVKASVREVITEDNEKPANKERVILDKNSIVSESLIGKKAALKFSNKLSGKMSSGKVLDKKSEKISGSNILRKKTNEASKRGLNESKRPLVPKETRKSEGAENKSSLGAKLFAFWQNGSEQINSGNKVNNVANNSQHVKPTKKLSSALPSLDEDAERRLVAMFKEATSSVTLEDVVKEHNFVSTHTHSLKNVVEKTITLGKLEGSVEAVRTALRMLEGGHNVRDAAAVCGPDVLNQIFKWKDKLKVYLAPVLYGNRYTSFGRHFTQIEKLEGIVDKLHWYVQNGDTIVDFCCGANDFSILMKKKLEETGKRCSYKNFDLLPTKNDFNFEMRDWMSVQTKELPTGSKLIMGLNPPFGLKAALANKFIDKALEFRPKLMILIVPSETQRLDEKRHPYDLVWEDERFLSGKSFYLPGSVDTNDRQMDQWNVKPPPLYLWSRPDWTSKHKAIAREHDHLIREREVSKMESFGEKESPSSHTKEDNSGVNIMRSDDILNSIAAPISEGHVGYSPHGSVDRGSQERQEYRVSDAENTSWKRKRPEENDGRGLGVTSPLNSIDVRSSVERFPPKHDVPPPDFEVVDKGYRNLEPTSSSHTRGAYSGTQNWPGDANPLYDSGVTGVDGRHGSLMRDTGYRLYVRENESNLREHIRQYGLQNPNNVTSNYVSSVHDPAYGHHEGYYPAHGSLYESPYVMNAPAMQRYAPRLDELNHVRMDPLGSEPPPMVGRGVPQPGYGSWMPGFAGGSHHLYSRQNSADRFNQ 1196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00850 1196 MobiDBLite consensus disorder prediction 1026 1047 - -
Viun6g00850 1196 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 5 910 - -
Viun6g00850 1196 MobiDBLite consensus disorder prediction 941 994 - -
Viun6g00850 1196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 225 285 IPR013083 -
Viun6g00850 1196 Pfam Cytosine specific DNA methyltransferase replication foci domain 14 133 IPR022702 -
Viun6g00850 1196 MobiDBLite consensus disorder prediction 1026 1048 - -
Viun6g00850 1196 MobiDBLite consensus disorder prediction 505 543 - -
Viun6g00850 1196 CDD PHD2_NSD 288 355 - -
Viun6g00850 1196 SMART PHD_3 228 283 IPR001965 -
Viun6g00850 1196 SMART PHD_3 357 424 IPR001965 -
Viun6g00850 1196 SMART PHD_3 288 356 IPR001965 -
Viun6g00850 1196 MobiDBLite consensus disorder prediction 899 917 - -
Viun6g00850 1196 MobiDBLite consensus disorder prediction 955 983 - -
Viun6g00850 1196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 405 IPR013083 -
Viun6g00850 1196 MobiDBLite consensus disorder prediction 899 925 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00850 Viun-Chr6 18242627 18259548 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00850 226 329 PHD Transcription Factor Family AT3G14980 32.692 1.57e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00850 - - gmx:100803073 1896.32