Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00823 ATGGGTAGCGAAGAAGAGAGGGTTCTTGAGAACCAACTCGAACTTCAATTGCAAGAGCAAAGGGATTCTCTCTCTGCTATCGATCAAGCTCTCCTCTCTGATCCAACCAACCCTGAGCTTCTCGCGGTTCATGAGGAGCTTGTCCAGGCAATTAAGGATGCAGAAGAAGGACTTTTTCACCTAAAACGTGCACGATTGTTACAGGAAGCGGATGCTGTTCTGCATAACACTAATATTTTTGCTGAAGAGGAGAAAGTGGAACTCCTTGATCCCACAGATGTTGAACCAGAGCCGTTGGAGGAAAAATGTCATTCTGTTGGATCTAAATGTAGATTCCGTCACATAGATGGGCGCTGGTACAATGGTCAAGTGGTGCAATTGGATAATTCAATGGCGAAAGTTTCATTCCTTACACCTACGTCTGAGAATATGCTGATGTGCAAGTTCTTTTTACAACAACGATGTCGATTTGGTAGTAACTGTCGCCTATCACATGGAGTTGATGTTCACTTGTCTGCTCTTAAGAAATTTGTCCCTACAATCTGGAAGCAGTCCCTTGTGGGGTCAAGCATATGGGCAGTCTCAACTGCAAATGCAGGCACTTGGAGAGAAGCCGAGCTCGAGTCCTGGGACGAAAAGGCTGGGGTTGGACAAGTTGTTTTCCGAGATGATGGGAGCACTGTGAAACTTGGTGCAGAAGAAATGGCACTGTCTGAGCACGCAGAAGTGAGTGACTCAGAGAGTGATTCCAGCTTACAGCAATCTGAGTCCAGTGACTTTGAGGAGGAGGAGGAATCACAAGGTTTAGGATTTCTGGAGAGTACCAATCTACAGAGAGGAGTTCAAACTGAAACTGCAAAATTTGCCACTTGGGAAAACCACACCAGAGGCATAGCTTCCAAAATGATGGCTAATATGGGGTACAGAGAAGGAATGGGTTTAGGTGTAACGGGTCAGGGAATGCTGGACCCCATACCGGTGAAGATGCTACCACCAAAGCAATCCTTGGATCATGCTCTGGAGTCTCACAAAAGGGAAGAGAATGAAGACAAGGAATTGAAGAAGAAACGGAGCCGAGGTGGCAAGAGAAAACGTGAGAAGAAATTTGCACAGGCAAATCGTGCAGCAAAAGAGGAAGAGGAGTCAACATCAGATGTGTTTGCATTGATAAACAATCAGCTGGCAATGCACAGTGAGGCTTTCGGCGGTGGATCAACAAAGAAGCATCAAAGTAAAGGTTCAGAGGAAGGTAAAAAGGTGGATAGACGAGCACTGGTTGCTTATGAAGAAGATGTGAAGGATTTGAAGATGAGGGTTGAAAAGCTTGAGCAAATTGTGAATTTGAATAAGAAAGAGAAGGCTGTGTATGAGGGTGCTATGAGAAAACTAAATGAAACACGCAAAGCCTTGGCTGATGCTGAAGCAGTTCATGCCTCTGCTTCAAATGCAGTTGTTAGCAAAGAAAAAGAGAAGAGATGGCTCAAGTTTTAG 1491 0.45 MGSEEERVLENQLELQLQEQRDSLSAIDQALLSDPTNPELLAVHEELVQAIKDAEEGLFHLKRARLLQEADAVLHNTNIFAEEEKVELLDPTDVEPEPLEEKCHSVGSKCRFRHIDGRWYNGQVVQLDNSMAKVSFLTPTSENMLMCKFFLQQRCRFGSNCRLSHGVDVHLSALKKFVPTIWKQSLVGSSIWAVSTANAGTWREAELESWDEKAGVGQVVFRDDGSTVKLGAEEMALSEHAEVSDSESDSSLQQSESSDFEEEEESQGLGFLESTNLQRGVQTETAKFATWENHTRGIASKMMANMGYREGMGLGVTGQGMLDPIPVKMLPPKQSLDHALESHKREENEDKELKKKRSRGGKRKREKKFAQANRAAKEEEESTSDVFALINNQLAMHSEAFGGGSTKKHQSKGSEEGKKVDRRALVAYEEDVKDLKMRVEKLEQIVNLNKKEKAVYEGAMRKLNETRKALADAEAVHASASNAVVSKEKEKRWLKF 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00823 496 SUPERFAMILY CCCH zinc finger 142 166 IPR036855 GO:0046872
Viun6g00823 496 Gene3D - 118 178 - -
Viun6g00823 496 Pfam G-patch domain 295 336 IPR000467 GO:0003676
Viun6g00823 496 SMART c3hfinal6 141 167 IPR000571 GO:0046872
Viun6g00823 496 Coils Coil 425 452 - -
Viun6g00823 496 Coils Coil 362 382 - -
Viun6g00823 496 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 496 - -
Viun6g00823 496 MobiDBLite consensus disorder prediction 340 356 - -
Viun6g00823 496 ProSiteProfiles Zinc finger C3H1-type profile. 141 168 IPR000571 GO:0046872
Viun6g00823 496 MobiDBLite consensus disorder prediction 237 276 - -
Viun6g00823 496 MobiDBLite consensus disorder prediction 340 383 - -
Viun6g00823 496 Coils Coil 336 356 - -
Viun6g00823 496 ProSiteProfiles G-patch domain profile. 295 341 IPR000467 GO:0003676
Viun6g00823 496 Coils Coil 456 476 - -
Viun6g00823 496 SMART G-patch_5 293 339 IPR000467 GO:0003676
Viun6g00823 496 Pfam CCCH-type zinc finger 146 166 IPR041367 -
Viun6g00823 496 MobiDBLite consensus disorder prediction 400 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00823 Viun-Chr6 18014326 18020685 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun6g00823 G-patch 2.4e-11 CL0449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00823 - - gmx:100796284 794.267