Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00822 ATGGGTGGTGGTGGCGCCGCTGGGGAATCCGGTTCAAGGCCGGTTTTTTTCAAAGAACAGAAATACCGCGGCGTCCGGAAGAGACCGTGGGGCCGGTTCGCCGCCGAAATCAGAGACCCTTTGAAGAAAGCCAGGGTTTGGCTCGGAACCTTCGACTCCGCCGAGGATGCGGCGCGTGCGTACGACGCGGCGGCGAGAACCCTCCGGGGACCCAAGGCGAAAACCAACTTTCCCCTCCCTCCGCCGTTCTACCACCCCGATCCGTTCACTGACCACCGGTATTTCGCCGGCCCCGGGGAGCCCTTTCACGATCACCGGCAGCCCACCTCCAGCGGCATGAGCAGTACCGTCGAGTCATTCAGCGGCCCGCGCGCCGCCGCCGCCACTGCGAATCCCGTGACCGTCGCTCGGAGGTACCCCCGAACGCCGCCGGTAGTCCCCGAGGACTGCCGCAGCGACTGCGACTCTTCGTCCTCCGTCGTGGAAGACGGCGACGGCGACAACGCTGCATCGTCGTTTCGGAGAGAACCGTTGCCGTTTGATCTTAACGTGTTGCCGTTGGAGGATTCCGACGTGGGAAACGGTGTGGATAATGATATGTTCTGCACCGTTCTTTGTCTCTGA 624 0.6298 MGGGGAAGESGSRPVFFKEQKYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDSAEDAARAYDAAARTLRGPKAKTNFPLPPPFYHPDPFTDHRYFAGPGEPFHDHRQPTSSGMSSTVESFSGPRAAAATANPVTVARRYPRTPPVVPEDCRSDCDSSSSVVEDGDGDNAASSFRREPLPFDLNVLPLEDSDVGNGVDNDMFCTVLCL 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00822 207 CDD AP2 20 78 IPR001471 GO:0003700|GO:0006355
Viun6g00822 207 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Viun6g00822 207 Coils Coil 204 207 - -
Viun6g00822 207 MobiDBLite consensus disorder prediction 107 122 - -
Viun6g00822 207 SUPERFAMILY DNA-binding domain 21 79 IPR016177 GO:0003677
Viun6g00822 207 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Viun6g00822 207 Gene3D AP2/ERF domain 20 79 IPR036955 GO:0003700|GO:0006355
Viun6g00822 207 MobiDBLite consensus disorder prediction 104 174 - -
Viun6g00822 207 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
Viun6g00822 207 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Viun6g00822 207 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Viun6g00822 207 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 21 183 - -
Viun6g00822 207 FunFam Ethylene-responsive transcription factor 2 20 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00822 Viun-Chr6 18004493 18005792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00822 18 207 AP2-EREBP Transcription Factor Family AT1G50640 59.709 3.21e-53 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Viun6g00822 AP2 1.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00822 K09286 - gmx:100782025 304.293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g00822 6 18004493 18005792 Viun6g00822 6 18004493 18005792 ECH
Viun6g00822 6 18004493 18005792 Viun8g02873 8 36646372 36647617 PCT