Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00819 ATGGAAGAACCTACCTCCAATCATGACTCAGTTACACATTCTTCTCCAATCATGTTGTTTGATGGGAAAACACTGGTCATGGATGAGATGGATTTCTTTGCAGACAATAACAACAACAACAAAAAGAACAAAAATGTATTTCATGACGATGAAATGCTGCACCAAATGGAGCTTCATGTCGATACTAGTTTGGATCTCCTTACCAAGAGTTCTCCTACCGATAGATCGATTATGGGAGAAGGATCATCGGAGGCAAAGGGTAATAAAAGAGATGATAAGTTTGCAGCTATGCTAGCTGAATTGCACCACATGAATGCTGAAAATCAACGCTTGAGAGATGAGGTTGATCAGGTGAACGATAAGTACCATGCTTTACATGATCAACTTGTCAAACAGATGGAGAAACAACGTAAGAATGAGGGTAAGAAAGTTGATATGATTTCAAGGCCATTCTTGGATATTGGAGTTGCTACGAAGGAAGAGAATTCGCAGCAATATTCGAAGGGAAAACTGCAAGAGAGCAAAAGCACGATGGACATGATTGAGAGCAAGAAGCAGAAGATTTGCACTAATAGAGAAGTTACTGAGTTGGAGGCACCTGAGAAAGCTATTCCAAGGTGGCTCTCGAACGAAGTCACAACAAGATCGAGTTCTTTCAATGTTGATGAAGCATCAGAAACCATGTCAATGATCAAGAAAGCTCGAGTATCAGTTCGTGCAAGATCTGTTTCTTCTATGATTTCTGATGGATGCCAATGGAGAAAGTATGGGCAGAAGATGGCTAAAGGGAATCCATGTCCAAGAGCTTATTATCGTTGTTCAATGGGGACTGGTTGCCCAGTTCGGAAACAAGTGCAAAGGAGTGCAGAAGATCAAAGTGTGTTGATCACAACATACGAAGGACAACATAGTCATGTTCTTCCTCCAGCAGCCAAAGCCATGGCATCCACAACATCTGCAGCTGCATCAATGCTTCTTTCAGGATCAATGCCAAGTTCAGATGGCCTTCTACACCCAAACATCTTAGAATCTGCAACACTTCCATTCTCACATAACTTAGCAACCCTTTCAGCTTCAGCTCCATTTCCCACTATCACTTTGGATCTCACTCAAACTCCCACCAATAACAACACTTCCTCACAGCAACATCCACCACAGGATTACCAACTCAGCCTACTTTCACCACTTTTCGCACCAAATTTTTTTCACCAAACTAAGCTTTCTACCTTGCATGCCTCTCAGGGCACAGAAACTGCTTCATTTGCTGACACAGTCAATGCAGCAACAGCTGCTATCACCACAGACCCCAAGTTCAGTGCAGCTCTCATGGCAGCCATAACATCTATCATTGGAAGTTCACACCCAGTGGAGACTCAGCATTGCAATAACAAACAAGAGTAG 1401 0.4261 MEEPTSNHDSVTHSSPIMLFDGKTLVMDEMDFFADNNNNNKKNKNVFHDDEMLHQMELHVDTSLDLLTKSSPTDRSIMGEGSSEAKGNKRDDKFAAMLAELHHMNAENQRLRDEVDQVNDKYHALHDQLVKQMEKQRKNEGKKVDMISRPFLDIGVATKEENSQQYSKGKLQESKSTMDMIESKKQKICTNREVTELEAPEKAIPRWLSNEVTTRSSSFNVDEASETMSMIKKARVSVRARSVSSMISDGCQWRKYGQKMAKGNPCPRAYYRCSMGTGCPVRKQVQRSAEDQSVLITTYEGQHSHVLPPAAKAMASTTSAAASMLLSGSMPSSDGLLHPNILESATLPFSHNLATLSASAPFPTITLDLTQTPTNNNTSSQQHPPQDYQLSLLSPLFAPNFFHQTKLSTLHASQGTETASFADTVNAATAAITTDPKFSAALMAAITSIIGSSHPVETQHCNNKQE 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00819 466 MobiDBLite consensus disorder prediction 69 90 - -
Viun6g00819 466 Gene3D WRKY domain 232 309 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun6g00819 466 Coils Coil 94 128 - -
Viun6g00819 466 Pfam WRKY DNA -binding domain 249 305 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun6g00819 466 ProSiteProfiles WRKY domain profile. 242 308 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun6g00819 466 FunFam probable WRKY transcription factor 31 232 309 - -
Viun6g00819 466 SUPERFAMILY WRKY DNA-binding domain 244 308 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun6g00819 466 SMART WRKY_cls 247 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun6g00819 466 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 73 460 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00819 Viun-Chr6 17948170 17951924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00819 26 454 WRKY Transcription Factor Family AT1G62300 42.050 8.61e-90 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun6g00819 WRKY 6.9e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00819 - - pvu:PHAVU_006G047300g 662.144