Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00790 ATGCCCTCTGCTCAGGATCCATTTTATGTTGTCAAGTCCGAGATTCAAGATTCGATTGATAAGCTGCAATCTACTTTTCATCAATGGGAAAGCACTTCCAATGCTGCAGAACAGGGACGTCTTACGAAGGAGGTTCGTGCTGGATGCGAAAGCATAGAGTGGCAGGTGGATGAATTGGATAAAGCAATTGCTGTAGCGTCTAGAGAACCTTCTTGGTATGGAATTGATGAAATTGAGCTTGAAAGCCGAAGGAAATGGACAAGCAATGCTCGATCTCAGGTTGTCACAATGAAGAAAGCATTGGAGGCCGGAAAGGGCTCAAGTTCCACAAGCCACAGCAGTGTAAATGGGATGCGCCAAGAACTCATGAGGCTACCAAGTTCTCATAAAAATGATACCTACGACCAGTATCCTGCCCGAGATAATGATGATTTCATACAGTCAGAATCAGATAGACAAATGCTTCTTATAAAGAAACAGGATGAGGAATTAGATGAGCTTAGTGAGAGTGTACGGAGAATTGGAGGTGTTGGACTTACAATTCATGATGAACTCACTGCACAGGACAGGATTCTAGAGGAACTTGGTTCAGAGATGGAAAGTACAACAAATCGACTTGATTTTGTCCAAAAAAAAGTGGGAATGGTTATGAAGAAAGCTAGTACAAAGGGTCAAATCATGATGATATGTGCTTTGTTGGCCTTGTTCATCTTCCTATTTATCTTAGTATTCTTCACCTAG 741 0.4197 MPSAQDPFYVVKSEIQDSIDKLQSTFHQWESTSNAAEQGRLTKEVRAGCESIEWQVDELDKAIAVASREPSWYGIDEIELESRRKWTSNARSQVVTMKKALEAGKGSSSTSHSSVNGMRQELMRLPSSHKNDTYDQYPARDNDDFIQSESDRQMLLIKKQDEELDELSESVRRIGGVGLTIHDELTAQDRILEELGSEMESTTNRLDFVQKKVGMVMKKASTKGQIMMICALLALFIFLFILVFFT 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00790 246 FunFam Syntaxin 10 3 104 - -
Viun6g00790 246 CDD SNARE_NTD_AtSYP61-like 5 102 - -
Viun6g00790 246 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 154 216 IPR000727 -
Viun6g00790 246 SMART tSNARE_6 149 216 IPR000727 -
Viun6g00790 246 Pfam SNARE domain 191 242 IPR000727 -
Viun6g00790 246 CDD SNARE_Qc 157 213 - -
Viun6g00790 246 Gene3D - 161 225 - -
Viun6g00790 246 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Viun6g00790 246 Coils Coil 192 212 - -
Viun6g00790 246 Gene3D - 2 104 - -
Viun6g00790 246 SUPERFAMILY t-snare proteins 5 102 IPR010989 GO:0016020|GO:0016192
Viun6g00790 246 SUPERFAMILY SNARE fusion complex 152 216 - -
Viun6g00790 246 PANTHER GOLGI SNARE BET1-RELATED 112 242 - -
Viun6g00790 246 FunFam syntaxin-61 isoform X1 157 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00790 Viun-Chr6 17671688 17675758 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00790 55 246 SNARE and Associated Proteins AT1G28490 69.271 1.26e-95 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00790 K08500 - gmx:100787129 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g00790 6 17671688 17675758 Viun8g02814 8 36425996 36429082 PCT