Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00786 ATGTTTTCTGGAATGATGCAAGCAACAACAAGGTGTAAGGAGCTTCTTTCCATGTGGCTTTTGGCTGCCAGTGCCAATTATGCACTTCGTCGATTCATGAAAGTCATAGAGAGAGTTGTTTTTGCTGAATTTACTTGCATTGTGGCATTAGGAGGGTCCATAATGGGGATAATTGCAGGAGCCATCAGTGGCCACACCACAGAAGCTGGTTTTGTTGATGGTGCTTGCAAAGGAGCTGTGACAGGGGCAATTGCTGCACTACAATTGCTAAATAATGCTGCAGCTGCTGAGCCTCTGTCTAAGTTTGCCCTATTGAGGAGTTTGCTAAATGGAAAGGTATTTATGGAATGGATATGTCCAGTAGTTGCAAAAGTGTATCAATGTCATATGAATGCACATGGAACAAGTTACAGAGAAGAATCATCAGATATAAACAATGGCGTTGTGAGGGGAATCACAGTCAAAGAAATGACTTGGAATATCATCCGAGAGCTTCCTGTTCAACAATTCAATTCCAGTGAAATGTTGAATCTTTACAATGAATCATGCTGCTCAATTTGCTTCCAAGATTTTGAGGATGAAGAATTTGTGAAGACACTTCCAAACTGTGGCCACTTTTTTCACTTGGTGTGCATAGACAAATGGCTAGTTAAACAAGGATCATGTCCCATCTGTAGAATTTATGTTCCACAATTATGA 699 0.4063 MFSGMMQATTRCKELLSMWLLAASANYALRRFMKVIERVVFAEFTCIVALGGSIMGIIAGAISGHTTEAGFVDGACKGAVTGAIAALQLLNNAAAAEPLSKFALLRSLLNGKVFMEWICPVVAKVYQCHMNAHGTSYREESSDINNGVVRGITVKEMTWNIIRELPVQQFNSSEMLNLYNESCCSICFQDFEDEEFVKTLPNCGHFFHLVCIDKWLVKQGSCPICRIYVPQL 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00786 232 Pfam Ring finger domain 184 226 IPR001841 -
Viun6g00786 232 SUPERFAMILY RING/U-box 177 230 - -
Viun6g00786 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 231 IPR013083 -
Viun6g00786 232 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 20 226 IPR044523 -
Viun6g00786 232 ProSiteProfiles Zinc finger RING-type profile. 184 226 IPR001841 -
Viun6g00786 232 SMART ring_2 184 225 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00786 Viun-Chr6 17573400 17575442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00786 42 229 C3H Transcription Factor Family AT5G66070 31.980 1.18e-32 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00786 - - gmx:100797332 329.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g00786 6 17573400 17575442 Viun6g00786 6 17573400 17575442 ECH