Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00708 ATGAGTTTATTTCCTTGTTGTTCATCACAAAGGAGGCTCAAGAAGAAGAGATTGAAATTGAAGAAGAGCATTAAGAAAGAAAAAGAATATGATGATAGAAGTGTCGCCTCATTTTCTAACATCTCTATTAGATCAGATAGTGGCAAGAGAAAGTTCATAACAGATGAGATAGCAAAGCTTGGGAAAGGAAACATTAGCTCTAGGATCATTTCTTATCATGAGTTATGTGATGCAACTAAGAACTTTCACCCTACCAACATGATTGGTGAAGGAGGCTTTGGGAGGGTATACAAAGGAAAACTTCGGAGCACTAATCAAGTTGTTGCTGTGAAGCAACTTGACAGAAATGGATTTCAAGGAACCAGAGAATTTCTTGTTGAGGTTTTAATTTTGAGTCTTCTGCACCATCCTAATCTGGTGAACTTGATAGGGTATTGTGCTGAAGGAGAACACAGAATTTTGGTGTATGAATACATGGCTAATGGTTCTCTAGAAGATCACTTACTTGACTTACCTGAAGGAGTGAAGGGTTTGGACTGGCATACCAGAATGAAAGTTGCAGAAGGTGCAGCAAAAGGACTTGAATATCTGCATGACCAAGCAAACCCTCCAGTGATATATCGTGATTTCAAAGCATCAAACATATTGTTGGATGAAGAGTTCAATCCAAAACTCTCTGATTTTGGACTTGCAAAGCTTGGACCAACAGGAGACAAAAAACATGTGTCTACCAGAGTGATGGGAACATATGGATATTGTGCTCCTGAGTATGCATCAACAGGGCAATTGACTACAAAATCGGATGTGTATAGCTATGGAGTGGTGCTTTTGGAGATGATCACGGGAAGAAGAGTCATTGAATATTCAAGGCCAGAAGAAGAGCAAAATTTAGTTCTTTGGGCACAACCACTCTTAAAAGATAGGAAGAAATTTACACAAATGGCAGATCCATTGTTGAAAGACGAGTATCCTGTAAAAAGTTTATACCAAGCTTTAGCAGTGGCAGCAATGTGCCTCCAAGAAGAAGATGAAACTCGACCTTTAATCAGTGATGTAGTTACAGCGGTTGAATTTTTGGCAAGGAAGAAAATAGAAGTGGATGAACCACAACCCACAAAACAAGTTCCTTCTACTCAAGAACAAGAAGAAGAAGAAGAAGAAGATAGTGATGAACAGAATCAATCTCAAGAAGATGGAGACAACAACCACAATGATGAGAACGAAGATGAAGAAACGAAGAATTAA 1245 0.3871 MSLFPCCSSQRRLKKKRLKLKKSIKKEKEYDDRSVASFSNISIRSDSGKRKFITDEIAKLGKGNISSRIISYHELCDATKNFHPTNMIGEGGFGRVYKGKLRSTNQVVAVKQLDRNGFQGTREFLVEVLILSLLHHPNLVNLIGYCAEGEHRILVYEYMANGSLEDHLLDLPEGVKGLDWHTRMKVAEGAAKGLEYLHDQANPPVIYRDFKASNILLDEEFNPKLSDFGLAKLGPTGDKKHVSTRVMGTYGYCAPEYASTGQLTTKSDVYSYGVVLLEMITGRRVIEYSRPEEEQNLVLWAQPLLKDRKKFTQMADPLLKDEYPVKSLYQALAVAAMCLQEEDETRPLISDVVTAVEFLARKKIEVDEPQPTKQVPSTQEQEEEEEEDSDEQNQSQEDGDNNHNDENEDEETKN 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00708 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Viun6g00708 414 MobiDBLite consensus disorder prediction 396 414 - -
Viun6g00708 414 ProSitePatterns Protein kinases ATP-binding region signature. 88 111 IPR017441 GO:0005524
Viun6g00708 414 Gene3D Transferase(Phosphotransferase) domain 1 159 385 - -
Viun6g00708 414 PANTHER OS07G0668900 PROTEIN 22 368 - -
Viun6g00708 414 ProSiteProfiles Protein kinase domain profile. 82 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g00708 414 FunFam Serine/threonine-protein kinase PBS1 159 375 - -
Viun6g00708 414 Gene3D Phosphorylase Kinase; domain 1 66 158 - -
Viun6g00708 414 SUPERFAMILY Protein kinase-like (PK-like) 66 362 IPR011009 -
Viun6g00708 414 CDD STKc_IRAK 88 353 - -
Viun6g00708 414 MobiDBLite consensus disorder prediction 365 414 - -
Viun6g00708 414 FunFam Serine/threonine-protein kinase CDL1-like 53 158 - -
Viun6g00708 414 Pfam Protein kinase domain 84 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g00708 414 MobiDBLite consensus disorder prediction 380 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00708 Viun-Chr6 17102072 17105640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00708 64 387 Glycoside Hydrolase AT3G07070 66.163 2.53e-158 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Viun6g00708 Pkinase 6.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00708 - - gmx:100790474 611.298