Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00650 ATGTGTCCAAATGATCCTGATGCTTCAAAGAAATTGAAGGAATGTGAAAAGGCAGTTATGAAGCTTAAATTTGAAGAAGCAATTGCTGCACCTGAGTCTGAAAGGCATTCAGTAGCTGAATCGATAGATTTCCACACAATAGGAAAGGGCCGCAATTCTTCGGTGCCAACCGAAGTGGCCATAGCAGCAGTGGTAGCAGTTATGGCAGCAGCGGTGATGTTGTTCAGGACATCAAAGACCACAATAGTAATTGCAATTGTGGTTGGTTTGCTGTTGCTCCTCGGGGCTTATTGGTGGAGTGGCCACAATACTGATGTCGAGCCACAGTATTCAGGAGCAAGAATAGAGGGGGACGTTGTTACTTTGGATTTTGTGAAAAAAATGATGGAAGATTTCAAGAACCAGAAGTTCTTACATAAACGGTATGCATTCCAGATTGTATTACAAACAAGAGAAATTTTGCAATCTTTGCCTTCTCTTGTTGACATACGTGTTCCTAATGGCAAACGTTTTACTGTTTGTGGTGATGTGCATGGTCAGTTCTATGATCTTTTGAATATTTTTGAGCTTAATGGACTTCCTTCAGAAGAGAATCCATATCTATTTAACGGCGACTTTGTGGATAGGGGATCTTTTTCATTAGAAGTTATCCTGACCTTGTTTGCATTTAAGTGCATGTCTCCATCAGCCATATATTTAGCCAGAGGAAATCACGAGAGCAAGAGCATGAACAAGATATATGGTTTTGAGGGTGAGGTGCGCTCAAAGTTGAATGATACTTTTGTCGAACTCTTTGCGGAAGTATTCTGCTTTCTACCACTGGCTCATGTGATAAATGAGAAAGTTTTCGTAGTTCATGGAGGTCTTTTCAGTGTTGACGGGGTCAAACTCTCTGACATCCGATCAATTAATCGATTCTGTGAACCTCCTGAAGAAGGGCTGATGTGTGAAGTTCTTTGGAGTGATCCACAACCTCTCCCTGGAAGGGGCCCAAGCAAGCGTGGTGTGGGTCTTTCTTTTGGTCCAGATGTTACAGAAGCATTTTTGAAGGAAAATAATTTAGATTTAGTTGTGAGATCTCATGAAGTAAAGGATGAGGGTTACGAGATTGAACATGATGGGAAACTCATAACTGTCTTTTCTGCTCCAAATTACTGTGACCAGATGGGTAACAAAGGTGCCTTTATTCGATTTGAAGCACCAGATTTGAAACCTAACATTGTCACATTCTCAGCAGTGCCACACCCTGATGTCAAACCAATGGCTTATGCAAACAACTTCCTCAGGATGTTCTCATAA 1299 0.4142 MCPNDPDASKKLKECEKAVMKLKFEEAIAAPESERHSVAESIDFHTIGKGRNSSVPTEVAIAAVVAVMAAAVMLFRTSKTTIVIAIVVGLLLLLGAYWWSGHNTDVEPQYSGARIEGDVVTLDFVKKMMEDFKNQKFLHKRYAFQIVLQTREILQSLPSLVDIRVPNGKRFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSLEVILTLFAFKCMSPSAIYLARGNHESKSMNKIYGFEGEVRSKLNDTFVELFAEVFCFLPLAHVINEKVFVVHGGLFSVDGVKLSDIRSINRFCEPPEEGLMCEVLWSDPQPLPGRGPSKRGVGLSFGPDVTEAFLKENNLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDLKPNIVTFSAVPHPDVKPMAYANNFLRMFS 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00650 432 SMART pp2a_7 138 414 IPR006186 GO:0016787
Viun6g00650 432 PIRSF PPPtase_5 1 432 - -
Viun6g00650 432 Pfam Calcineurin-like phosphoesterase 170 364 IPR004843 GO:0016787
Viun6g00650 432 PRINTS Serine/threonine phosphatase family signature 297 324 IPR006186 GO:0016787
Viun6g00650 432 PRINTS Serine/threonine phosphatase family signature 200 227 IPR006186 GO:0016787
Viun6g00650 432 PRINTS Serine/threonine phosphatase family signature 267 293 IPR006186 GO:0016787
Viun6g00650 432 PRINTS Serine/threonine phosphatase family signature 353 373 IPR006186 GO:0016787
Viun6g00650 432 PRINTS Serine/threonine phosphatase family signature 170 197 IPR006186 GO:0016787
Viun6g00650 432 PRINTS Serine/threonine phosphatase family signature 233 257 IPR006186 GO:0016787
Viun6g00650 432 PRINTS Serine/threonine phosphatase family signature 375 391 IPR006186 GO:0016787
Viun6g00650 432 CDD MPP_PP5_C 110 425 IPR041753 -
Viun6g00650 432 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 2 425 - -
Viun6g00650 432 FunFam Serine/threonine-protein phosphatase 5 95 431 - -
Viun6g00650 432 Gene3D - 98 431 IPR029052 -
Viun6g00650 432 Pfam PPP5 TPR repeat region 103 162 IPR013235 -
Viun6g00650 432 SUPERFAMILY Metallo-dependent phosphatases 119 426 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00650 Viun-Chr6 16566695 16576763 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00650 116 359 Calmodulin-binding Proteins AT5G63870 34.256 7.60e-42 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00650 K04460 - gmx:100820099 805.053