Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00632 ATGGAGCTTCCAAATCAAGCTCAAGAAGGGTCTTCTCAAAAGAAGATGGGAAGAGGGAAGATTGAAATCAAACGGATCGAGAACACCACAAATAGGCAAGTCACCTTCTGCAAACGCCGCAACGGTTTGCTGAAGAAAGCTTATGAATTGTCAGTTCTTTGTGATGCTGAAGTTGCCCTTGTTGTCTTCTCAAGCCGTGGCCGTTTGTATGAGTATGCCAACAACAGTGTTAGGGCAACTATCGAAAGGTACAAAAAGGCAAGTGCTGCTTCCACAAACGCAGAATCTGTATCTGAAGTTAATACGCAGCAAGAATCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAACCTAAACAGGCACATCCTTGGGGAAGCTCTTGGTTCTCTGAGTCTCAAGGAACTGAAGAACCTCGAGGGTAGATTGGAGAAAGGATTAAGTAGGGTTAGGTCTAGAAAGCATGAAACATTGTTTGCTGATGTTGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAACCATAACAATTATCTGCGAGCTAAGATAGCTGAACATGAGAGAGCTCAACAACAGCAACAGCAAACAAATATGATGCAAGGAACACTGTGTGAGTCCCTTCCTTCACAATCTTATGACAGGAACTTTTTCCCTGTAAATCTCATACCTTCTGATCAACAATATTCACGTCAAGACCAAACTGCTCTCCAACTTGTGTGA 720 0.425 MELPNQAQEGSSQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRATIERYKKASAASTNAESVSEVNTQQESSKLRRQIRDIQNLNRHILGEALGSLSLKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKIAEHERAQQQQQQTNMMQGTLCESLPSQSYDRNFFPVNLIPSDQQYSRQDQTALQLV 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00632 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Viun6g00632 239 Pfam K-box region 98 183 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun6g00632 239 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Viun6g00632 239 FunFam MADS-box transcription factor 21 28 94 - -
Viun6g00632 239 MobiDBLite consensus disorder prediction 1 21 - -
Viun6g00632 239 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Viun6g00632 239 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Viun6g00632 239 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Viun6g00632 239 SUPERFAMILY SRF-like 17 95 IPR036879 GO:0003677|GO:0046983
Viun6g00632 239 Coils Coil 172 192 - -
Viun6g00632 239 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Viun6g00632 239 CDD MADS_MEF2_like 17 91 IPR033896 GO:0000977|GO:0045944
Viun6g00632 239 Gene3D - 28 110 IPR036879 GO:0003677|GO:0046983
Viun6g00632 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 16 195 - -
Viun6g00632 239 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Viun6g00632 239 ProSiteProfiles K-box domain profile. 99 189 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00632 Viun-Chr6 16387184 16392885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00632 1 239 MADS-box Gene Family AT3G58780 68.145 2.30e-117 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Viun6g00632 K-box 2.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00632 K09264 - gmx:100808734 423.32