LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun6g00630	ATGGACGGTGCGCCACCATCCGCCGCTGCCGCCGCCGCCGCCGCAGGAGGACCGGCGCCGTTTCTTCTGAAGACCTACGACATGGTGGACGATCCCTCCACCAACGACATCGTTTCGTGGAGCTCATGCAACGCCAGCTTCGTCGTGTGGAATCCGCCGGAGTTCGCTCGCCTTCTTCTCCCGACCTATTTCAAGCACAACAACTTTTCCAGCTTCATCCGCCAGCTCAATACCTACGGTTTCCGAAAAATACACCCAGAGCGCTGGGAATTTGCTAATGATGAGTTTGTGAAAGATCAGAAGCATCTCCTTAAGAATATACATCGCAGGAAACCTATCCACAGTCATAGTCATCCTCCGGGTTCTATTGTAGATCCAGAAAGAGCAGAATTTGAGGAGGAAATTGACAAACTTTCCCGTGAGAAAACTTCTCTTGAATCCAATATTCATAACTTCAAACAACATCAGTCAACAGCAAAGCTTCAACTAGAAGATTTTCTGCAGCGGTTAGATGCTACTGAAAAGAGGCAAAAACAATTGCTGAACTTCTTTGAGAAGGCTCTTCAGAATCCTAGTTTTGTTGAACATCTTTCACGCAAAATTGAATCCATGGATTTATCGGCATATAATAAGAAGAGGCGATTGCCTCAAGCTGATCATGTTCAACCTGTTGCAGAAAGCAGCTTCGTGGACAGTCACAACAATTTTAGAATGGAATTTGGAAATATTTTCCATCAGGATTTCTCGAATAAACTCAGACTGGAATTGTCACCCGCTGTGTCAGATATGAACTTGGTATCACGTAGCACACAGAGTTCAAATGAAGATGGGGAAAGTCCACAGAAAAAACTATCTGAAGTAGAACCAAAAGGAGTGCAGACAAGAACATCTCTTACATTTGCACCTGAAACATTAGAACTTGCGGATACGGGGGCTTCTTTTACTTTTAAGATGGATACATGTTTGCCGCGAAAAGCATCAACTGCTGAGAACTCAAAACTGATCTCTTTGGAGCCAAGTGGTGAAGAAGGTGATAGTTGCCAATTAAATTTAACCCTGGCATCTTGTCCAGTGCAAGTAAACAGAAATTCATACTCAGCCAGATCGCCCCAAATTGACTGTCAAGAAATTGGCAAATTAGCAGAATCGAGATTTTTTGCCAGTGTCAAAGAATCTGAAAGTGGTGTTTCCTCAAACCAGAATCTAGCTGCTGAGGCCACCAATTTAGCTTCACCACAGGAGGCTCCAAGTAACAACCAAGTTAATCCAGCTCCTCCAGACAGGGTTAATGATGTTTTCTGGGAACAGTTTCTTACCGAAAGGCCAGGCTGTTCTGACAATAATGAAGAGGCAATATCCAACTACCGAGCAAACCCATATGATGAACAAGACGAAGGACGGTCAGTTCACGGAATATCTAGAAACATTAAGAACATGGATCAACTCACTCTTTGA	1455	0.4405	MDGAPPSAAAAAAAAGGPAPFLLKTYDMVDDPSTNDIVSWSSCNASFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIHPERWEFANDEFVKDQKHLLKNIHRRKPIHSHSHPPGSIVDPERAEFEEEIDKLSREKTSLESNIHNFKQHQSTAKLQLEDFLQRLDATEKRQKQLLNFFEKALQNPSFVEHLSRKIESMDLSAYNKKRRLPQADHVQPVAESSFVDSHNNFRMEFGNIFHQDFSNKLRLELSPAVSDMNLVSRSTQSSNEDGESPQKKLSEVEPKGVQTRTSLTFAPETLELADTGASFTFKMDTCLPRKASTAENSKLISLEPSGEEGDSCQLNLTLASCPVQVNRNSYSARSPQIDCQEIGKLAESRFFASVKESESGVSSNQNLAAEATNLASPQEAPSNNQVNPAPPDRVNDVFWEQFLTERPGCSDNNEEAISNYRANPYDEQDEGRSVHGISRNIKNMDQLTL	484

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun6g00630	484	ProSitePatterns	HSF-type DNA-binding domain signature.	60	84	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Viun6g00630	484	SUPERFAMILY	"Winged helix" DNA-binding domain	17	110	IPR036390	-
	Viun6g00630	484	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	13	279	IPR027725	-
	Viun6g00630	484	FunFam	Heat shock transcription factor 1	14	111	-	-
	Viun6g00630	484	SMART	hsfneu3	17	110	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Viun6g00630	484	Coils	Coil	128	155	-	-
	Viun6g00630	484	Gene3D	-	15	111	IPR036388	-
	Viun6g00630	484	Pfam	HSF-type DNA-binding	21	110	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Viun6g00630	484	PRINTS	Heat shock factor (HSF) domain signature	72	84	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Viun6g00630	484	PRINTS	Heat shock factor (HSF) domain signature	59	71	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Viun6g00630	484	PRINTS	Heat shock factor (HSF) domain signature	21	44	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Viun6g00630	484	MobiDBLite	consensus disorder prediction	266	294	-	-
	Viun6g00630	484	MobiDBLite	consensus disorder prediction	457	484	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun6g00630	Viun-Chr6	16360239	16364343	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun6g00630	1	484	HSF	AT4G13980	54.343	7.49e-169	482

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Viun6g00630		HSF_DNA-bind	4.1e-31	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun6g00630	K09419		-	gmx:100816484	861.292