Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00616 ATGGACTTTTTCTCTGAATATGGTGATGCCAACCAGTACAAGATTCAAGAAGTCATTGGGAAGGGTAGTTATGGTGTTGTCTGTTCAGCCATTGACACTCGCACTGGAGAAAATGTGGCAATTAAGAAGATTCATGACATCTTCGAGCATATATCGGATGCTGCTCGAATTCTCCGCGAGATAAAACTGCTCAGACTTCTTCGACATCCTGATATTGTAGAAATAAAACACATTATGCTGCCTCCATCATGGAAGGACTTCAAAGATATTTATGTTGTTTTTGAGCTTATGGAGTCTGATCTTCATCACGTCATCAAAGCCAATGATAACTTGACAAAAGAACACTATCAATTTTTCCTTTATCAATTACTTCGAGCACTGAAGTACATTCATAGTGCAAACGTCTATCATCGAGATTTGAAGCCAAAGAATATACTGGCAAATGCAAACTGTAAGCTTAAAATCTGTGATTTTGGGTTAGCTAGAGTTGCCTTCAGTGACACACCAACAACTATATTTTGGACGGATTATGTTGCTACAAGGTGGTATAGAGCTCCAGAGCTATGTGGATCATTTTACTCAAAGTATACACCAGCAATTGATATATGGAGTATAGGTTGTATCTTTGCTGAAGTACTAATGGGAAAGCCACTTTTTCCTGGAAAAAATGTAGTCCACCAATTGGACCTGATGACAGATCTGCTTGGGACACCTTCACTTGATACTATATCACGGGTACGCAATGAGAAAGCGAGGAGATACCTAACTAGCATGAGGAAAAAGCAGCCTGTGCCGTTTGCTCAAAAGTTTCCCAATGCAGACCCTTTAGCACTGCGTCTACTGGAAAGGTTGTTGGCTTTTGATCCAAAAGATCGGCCTACAGCCGAAGAGGCATTGGCTGATCCTTACTTCAAGGGCCTGGCAAAAGTTGAGAAGGAGCCATCTTGCCAACTTATCACAAAAATGGAGTTTGAATTTGAAAGACGAAGAGTCACAAAGGACGAAATTCGAGAACTGATTTTCCGCGAGATTCTAGAGTATCATCCTCAGCTATTGAAAGACTACATGAATGGAAATGAGAGAACCAATTTTCTTTATCCAAGTGCTGTTGATCAATTCAGAAAGCAGTTTGCTCATCTGGAGGAAAATGGTAAAACTGGTCATGTTATGCCACTTGAAAGAAAGCATGTTTCTCTTCCAAGGTCAACCATTGTACATTCAAATTCTAATGCAATGCATCCAAAAGATCAAACAAACATTGCTGCCTGCAAAAACCGAGCAACTGCTGAGGAATGCAACAGGAATTCCAGAGATACAAAAATTCTAGTGCCAAGGTCAATGCAGGGACCACCAAGAATCCCACTAGCAAAACCTGTTAAAGTTGTGGGGCCAGTTGTTCCACACGAGTACGATAACATTGTGAAGGATTCTTATGATCCTAGGTCGTTTATCAGAGGTTCTGTGCTTCCTACCCAACCTGTTCCCCCAGCATACTATTATCATCAGAGATCCAGCACTGGAACTGCAACAGAAGCTGACAAGAGTGTGCCTCTGCAAGCAAAACAACATGATCAAGAACAATTTGGAGTTAATGCCAAGAGGGCACCAGAAATAGCTATTAATATTGATACAAATCCATTTTTTATGACAAGGGCAGGGGTTAACAAGTTAGAACAAGGTGATCAATTAGTCATAGAGACAAACTTGTTGCAGCCAAAGACATATGGTGGAAGCAGTGCTGCAGCTGGGGCCACTGCTCATAGAAAAATGGGCCCTGTTCAGTATGGTATGACAAGAATGTTCTAG 1806 0.4114 MDFFSEYGDANQYKIQEVIGKGSYGVVCSAIDTRTGENVAIKKIHDIFEHISDAARILREIKLLRLLRHPDIVEIKHIMLPPSWKDFKDIYVVFELMESDLHHVIKANDNLTKEHYQFFLYQLLRALKYIHSANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFYSKYTPAIDIWSIGCIFAEVLMGKPLFPGKNVVHQLDLMTDLLGTPSLDTISRVRNEKARRYLTSMRKKQPVPFAQKFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLAKVEKEPSCQLITKMEFEFERRRVTKDEIRELIFREILEYHPQLLKDYMNGNERTNFLYPSAVDQFRKQFAHLEENGKTGHVMPLERKHVSLPRSTIVHSNSNAMHPKDQTNIAACKNRATAEECNRNSRDTKILVPRSMQGPPRIPLAKPVKVVGPVVPHEYDNIVKDSYDPRSFIRGSVLPTQPVPPAYYYHQRSSTGTATEADKSVPLQAKQHDQEQFGVNAKRAPEIAINIDTNPFFMTRAGVNKLEQGDQLVIETNLLQPKTYGGSSAAAGATAHRKMGPVQYGMTRMF 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00616 601 Pfam Protein kinase domain 13 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g00616 601 ProSiteProfiles Protein kinase domain profile. 13 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g00616 601 ProSitePatterns Protein kinases ATP-binding region signature. 19 43 IPR017441 GO:0005524
Viun6g00616 601 FunFam Mitogen-activated protein kinase 99 327 - -
Viun6g00616 601 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 13 357 - -
Viun6g00616 601 SUPERFAMILY Protein kinase-like (PK-like) 10 308 IPR011009 -
Viun6g00616 601 ProSitePatterns MAP kinase signature. 48 151 IPR003527 GO:0004707|GO:0005524|GO:0006468
Viun6g00616 601 FunFam Mitogen-activated protein kinase 4 106 - -
Viun6g00616 601 SMART serkin_6 13 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g00616 601 Gene3D Phosphorylase Kinase; domain 1 28 350 - -
Viun6g00616 601 CDD STKc_TDY_MAPK 12 349 - -
Viun6g00616 601 Gene3D Transferase(Phosphotransferase) domain 1 99 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00616 Viun-Chr6 16136603 16142175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00616 1 439 MAP Kinase Gene Family AT2G42880 84.106 0.0 768
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Viun6g00616 Pkinase 6.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00616 - - gmx:100811788 1043.49