Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00613 ATGGACAAAAATTATGGGGATTCTTCATCAGCTCATGCTGCCACAGGTTCATCTGAGACTTCCTTGCTTAATGCTCGGAAAAAAGTGGCAAGCAGTGCATGGGGAATACCACGAGCAACTGATGTGTTCCATGATTCAAGTGATATTAGCTTGTTTTCCAGTTCACTGCCTGTTCTTCCACATGAAAAGTTAGATTTGACTGATTCTGAAAATTATACCCAACCAGTTGATGATAACTTGCTAACGTCAGAGAAAATTCATAAAGAAGATGAGGGACACGATCCTTTTGATGATTTTGAAGCCAGTGCAGTAGGGAACATGCTTCCTGACGATGAAGAGGAGCTTTTAGCTGGGATTATGGATGATTTTGACCTCAGTAAATTGCCCAGCCAACTGGAGGATTTAGATGAAAATGATCTGTTTGTCAATGGAGGAGAATTTGAGATGGATTTTGAACCCCAAGAGAGCCTTAACATTGGCATTTCCAAGATAAGCATATCAGATGGAGTTGCTTCAAATGGTATTGGTCACTATGCTATCCCAAATGGTGTTGGAACTGTGGCTGGGGAGCATCCCTATGGAGAGCATCCATCAAGGACACTATTTGTTCGAAACATCAACAGTAATGTTGAGGACTCTGAATTACGAACACTATTTGAGCAATATGGGGATATCAGAACTTTGTACACAGCATGCAAACATAGAGGCTTTGTGATGATATCATACTATGACATTCGAGCTGCTCGAACTGCCATGCGTGCTTTACAAAACAAACCCTTGAGACGTAGAAAACTTGATATTCATTTTTCAATTCCGAAGGATAACCCTTCAGAAAAAGATATAAATCAAGGAACCCTTGTAGTGTTCAATTTAGACCCATCAGTCTCAAATGATGACCTTCGGCAAATATTTGGGGCTTATGGTGAGGTCAAGGAGATCAGGGAAACACCGCATAAGAGGCACCATAAATTTATTGAATTTTATGATGTTAGAGCAGCAGAGGCAGCTCTTAAAGCATTAAATCGAAGTGACATCGCTGGGAAACGCATAAAACTTGAACCCAGTCGCCCTGGTGGAGCACGTAGAAACTTGATGCAACAACTAAGTCAAGAACTGGAACAAGATGAAGCTCGAACTTTTAGACATCAAGTAGGTTCACCCGTGGCCAATTCTCCTCCAGGTAGCTGGGCACAATTTGGAAGTCCAGTTGAAAATAATCCATTAGGTTCTTTTAGCAAGTCCCCTGGTTTTGGTCATGCCAGTCCCATTAATACCACCAACCATTTGTCTGGATTGGCTGCAATTCTTTCCCCACATGCAACAACCTCTCCCAAGATTGCGCCAATTGGCAAGGATCCTGGAAGGACTGCAAATCAGCTGTTTGCAAACTCCGGGTCAACTCAAGGAGCAGCTTTTCAGCATTCTATGTCCTTTCCTGAGCAAAATGCAAATGCAAGTCCTAGGCCTATATCTAATTTTGGTGAATCAAATTCAGGTGCATCAAGTATTGGAACGCTGTCTGGTCCTCAATTTCTTTGGGGAAGTCCAACTCCTTACTCTGAGCATTCAAACACTTCATGGTCTTCATCTTCTGTGGGACTTCCATTTACGTCTGGAGTCCAAAGGCAGGGTTTTCCATATACTAGTCATCGAAGTCCTTTTCTTGGTTCCCATTCCCATCATCACGTTGGATCTGCTCCATCTGGCCTTCCACTTGATAGGCATTTTAGCTATTTCCCTGAATCACCTGAAGCTTCTCTCATGAGCCCTGTTGCGTTTGGGAATTTAAATCAGAGTGAAGGAAATTTTATGATGAACATGGGTGGTCATGCCTCCATAGGAGCTGGTCTGTCAGGAAATACTGCTGAAATTAGTTCTCCCAATTTCAGAATGATGTCGTTGCCTAGGCCTGGTTCCTTGTTTCATGGAAATAGTTCGTATACTGGACAAGGAGCAACTAACATTGATGGATTAGCCGGACGTGGCCAAAGTAGACGACCTGACAATGCTGGGAACCAAATGGACAGTAAGAAATTGTACCAGCTTGATCTAGACAAAATTGTCAGTGGTGAAGATGCAAGAACTACTTTAATGATTAAAAACATTCCTAACAAGTATACCTCAAAGATGTTGCTTGCTGCAATTGATGAGAGTCACCGGGGTACTTATGACTTTCTGTACTTGCCAATTGACTTTAAGAATAAGTGTAATGTGGGTTATGCTTTTATCAACATGGTGTCTCCTTCACACATCATCCCCTTCTATAAGGCCTTCAACGGGAAAAAGTGGGAGAAGTTCAACAGTGAAAAGGTTGCTTCACTGGCATATGCACGGATACAAGGAAAAGCTGCACTTGTGATGCATTTCCAGAATTCAAGCTTAATGAATGAGGACAAACGATGCCGGCCAATTCTCTTTCATTCAGAGGGCCAGGATACTAGTGACCAGGAACATTTTCTATCCAGCAATTTGAATATATGCATTCGTCAACCAGATGGATCCTATTCAGGTGACTTGTTGGAGAGCCCGAAGGGCAATTTGGAATTAGAGAAAGATTAA 2559 0.4228 MDKNYGDSSSAHAATGSSETSLLNARKKVASSAWGIPRATDVFHDSSDISLFSSSLPVLPHEKLDLTDSENYTQPVDDNLLTSEKIHKEDEGHDPFDDFEASAVGNMLPDDEEELLAGIMDDFDLSKLPSQLEDLDENDLFVNGGEFEMDFEPQESLNIGISKISISDGVASNGIGHYAIPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEARTFRHQVGSPVANSPPGSWAQFGSPVENNPLGSFSKSPGFGHASPINTTNHLSGLAAILSPHATTSPKIAPIGKDPGRTANQLFANSGSTQGAAFQHSMSFPEQNANASPRPISNFGESNSGASSIGTLSGPQFLWGSPTPYSEHSNTSWSSSSVGLPFTSGVQRQGFPYTSHRSPFLGSHSHHHVGSAPSGLPLDRHFSYFPESPEASLMSPVAFGNLNQSEGNFMMNMGGHASIGAGLSGNTAEISSPNFRMMSLPRPGSLFHGNSSYTGQGATNIDGLAGRGQSRRPDNAGNQMDSKKLYQLDLDKIVSGEDARTTLMIKNIPNKYTSKMLLAAIDESHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQDTSDQEHFLSSNLNICIRQPDGSYSGDLLESPKGNLELEKD 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00613 852 CDD RRM1_MEI2_like 198 274 IPR034453 -
Viun6g00613 852 PANTHER RNA RECOGNITION MOTIF-CONTAINING 20 825 - -
Viun6g00613 852 SUPERFAMILY RNA-binding domain, RBD 696 781 IPR035979 GO:0003676
Viun6g00613 852 MobiDBLite consensus disorder prediction 1 22 - -
Viun6g00613 852 Gene3D - 283 381 IPR012677 -
Viun6g00613 852 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 272 IPR000504 GO:0003723
Viun6g00613 852 MobiDBLite consensus disorder prediction 7 22 - -
Viun6g00613 852 Gene3D - 188 282 IPR012677 -
Viun6g00613 852 SUPERFAMILY RNA-binding domain, RBD 196 359 IPR035979 GO:0003676
Viun6g00613 852 CDD RRM3_MEI2_like 697 782 IPR034454 -
Viun6g00613 852 MobiDBLite consensus disorder prediction 385 414 - -
Viun6g00613 852 Pfam RNA recognition motif 2 694 790 IPR007201 -
Viun6g00613 852 CDD RRM2_MEI2_like 283 353 - -
Viun6g00613 852 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 265 IPR000504 GO:0003723
Viun6g00613 852 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 351 IPR000504 GO:0003723
Viun6g00613 852 FunFam MEI2-like protein 5 isoform 2 188 282 - -
Viun6g00613 852 SMART rrm1_1 696 772 IPR000504 GO:0003723
Viun6g00613 852 SMART rrm1_1 200 268 IPR000504 GO:0003723
Viun6g00613 852 SMART rrm1_1 285 353 IPR000504 GO:0003723
Viun6g00613 852 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 357 IPR000504 GO:0003723
Viun6g00613 852 MobiDBLite consensus disorder prediction 479 501 - -
Viun6g00613 852 FunFam Protein MEI2-like 1 283 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00613 Viun-Chr6 16102974 16113255 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00613 194 370 Eukaryotic Initiation Factors Gene Family AT3G16380 25.758 3.15e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00613 - - gmx:100812324 1541.55