Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00612 ATGGACAAAAATTATGGGGATTCTTCATCAGCTCATGCTGCCACAGGTTCATCTGAGACTTCCTTGCTTAATGCTCGGAAAAAAGTGGCAAGCAGTGCATGGGGAATACCACGAGCAACTGATGTGTTCCATGATTCAAGTGATATTAGCTTGTTTTCCAGTTCACTGCCTGTTCTTCCACATGAAAAGTTTGATGATAACTTGCTAACGTCAGAGAAAATTCATAAAGAAGATGAGGGACACGATCCTTTTGATGATTTTGAAGCCAGTGCAGTAGGGAACATGCTTCCTGACGATGAAGAGGAGCTTTTAGCTGGGATTATGGATGATTTTGACCTCAGTAAATTGCCCAGCCAACTGGAGGATTTAGATGAAAATGATCTGTTTGTCAATGGAGGAGAATTTGAGATGGATTTTGAACCCCAAGAGAGCCTTAACATTGGCATTTCCAAGATAAGCATATCAGATGGAGTTGCTTCAAATGGTATTGGTCACTATGCTATCCCAAATGGTGTTGGAACTGTGGCTGGGGAGCATCCCTATGGAGAGCATCCATCAAGGACACTATTTGTTCGAAACATCAACAGTAATGTTGAGGACTCTGAATTACGAACACTATTTGAGCAATATGGGGATATCAGAACTTTGTACACAGCATGCAAACATAGAGGCTTTGTGATGATATCATACTATGACATTCGAGCTGCTCGAACTGCCATGCGTGCTTTACAAAACAAACCCTTGAGACGTAGAAAACTTGATATTCATTTTTCAATTCCGAAGGATAACCCTTCAGAAAAAGATATAAATCAAGGAACCCTTGTAGTGTTCAATTTAGACCCATCAGTCTCAAATGATGACCTTCGGCAAATATTTGGGGCTTATGGTGAGGTCAAGGAGATCAGGGAAACACCGCATAAGAGGCACCATAAATTTATTGAATTTTATGATGTTAGAGCAGCAGAGGCAGCTCTTAAAGCATTAAATCGAAGTGACATCGCTGGGAAACGCATAAAACTTGAACCCAGTCGCCCTGGTGGAGCACGTAGAAACTTGATGCAACAACTAAGTCAAGAACTGGAACAAGATGAAGCTCGAACTTTTAGACATCAAGTAGGTTCACCCGTGGCCAATTCTCCTCCAGGTAGCTGGGCACAATTTGGAAGTCCAGTTGAAAATAATCCATTAGGTTCTTTTAGCAAGTCCCCTGGTTTTGGTCATGCCAGTCCCATTAATACCACCAACCATTTGTCTGGATTGGCTGCAATTCTTTCCCCACATGCAACAACCTCTCCCAAGATTGCGCCAATTGGCAAGGATCCTGGAAGGACTGCAAATCAGCTGTTTGCAAACTCCGGGTCAACTCAAGGAGCAGCTTTTCAGCATTCTATGTCCTTTCCTGAGCAAAATGCAAATGCAAGTCCTAGGCCTATATCTAATTTTGGTGAATCAAATTCAGGTGCATCAAGTATTGGAACGCTGTCTGGTCCTCAATTTCTTTGGGGAAGTCCAACTCCTTACTCTGAGCATTCAAACACTTCATGGTCTTCATCTTCTGTGGGACTTCCATTTACGTCTGGAGTCCAAAGGCAGGGTTTTCCATATACTAGTCATCGAAGTCCTTTTCTTGGTTCCCATTCCCATCATCACGTTGGATCTGCTCCATCTGGCCTTCCACTTGATAGGCATTTTAGCTATTTCCCTGAATCACCTGAAGCTTCTCTCATGAGCCCTGTTGCGTTTGGGAATTTAAATCAGAGTGAAGGAAATTTTATGATGAACATGGGTGGTCATGCCTCCATAGGAGCTGGTCTGTCAGGAAATACTGCTGAAATTAGTTCTCCCAATTTCAGAATGATGTCGTTGCCTAGGCCTGGTTCCTTGTTTCATGGAAATAGTTCGTATACTGGACAAGGAGCAACTAACATTGATGGATTAGCCGGACGTGGCCAAAGTAGACGACCTGACAATGCTGGGAACCAAATGGACAGTAAGAAATTGTACCAGCTTGATCTAGACAAAATTGTCAGTGGTGAAGATGCAAGAACTACTTTAATGATTAAAAACATTCCTAACAAGTATACCTCAAAGATGTTGCTTGCTGCAATTGATGAGAGTCACCGGGGTACTTATGACTTTCTGTACTTGCCAATTGACTTTAAGAATAAGTGTAATGTGGGTTATGCTTTTATCAACATGGTGTCTCCTTCACACATCATCCCCTTCTATAAGGCCTTCAACGGGAAAAAGTGGGAGAAGTTCAACAGTGAAAAGGTTGCTTCACTGGCATATGCACGGATACAAGGAAAAGCTGCACTTGTGATGCATTTCCAGAATTCAAGCTTAATGAATGAGGACAAACGATGCCGGCCAATTCTCTTTCATTCAGAGGGCCAGGATACTAGTGACCAGGAACATTTTCTATCCAGCAATTTGAATATATGCATTCGTCAACCAGATGGATCCTATTCAGGTGACTTGTTGGAGAGCCCGAAGGGCAATTTGGAATTAGAGAAAGATTAA 2523 0.4241 MDKNYGDSSSAHAATGSSETSLLNARKKVASSAWGIPRATDVFHDSSDISLFSSSLPVLPHEKFDDNLLTSEKIHKEDEGHDPFDDFEASAVGNMLPDDEEELLAGIMDDFDLSKLPSQLEDLDENDLFVNGGEFEMDFEPQESLNIGISKISISDGVASNGIGHYAIPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEARTFRHQVGSPVANSPPGSWAQFGSPVENNPLGSFSKSPGFGHASPINTTNHLSGLAAILSPHATTSPKIAPIGKDPGRTANQLFANSGSTQGAAFQHSMSFPEQNANASPRPISNFGESNSGASSIGTLSGPQFLWGSPTPYSEHSNTSWSSSSVGLPFTSGVQRQGFPYTSHRSPFLGSHSHHHVGSAPSGLPLDRHFSYFPESPEASLMSPVAFGNLNQSEGNFMMNMGGHASIGAGLSGNTAEISSPNFRMMSLPRPGSLFHGNSSYTGQGATNIDGLAGRGQSRRPDNAGNQMDSKKLYQLDLDKIVSGEDARTTLMIKNIPNKYTSKMLLAAIDESHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQDTSDQEHFLSSNLNICIRQPDGSYSGDLLESPKGNLELEKD 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00612 840 CDD RRM1_MEI2_like 186 262 IPR034453 -
Viun6g00612 840 SUPERFAMILY RNA-binding domain, RBD 184 347 IPR035979 GO:0003676
Viun6g00612 840 Gene3D - 176 270 IPR012677 -
Viun6g00612 840 Pfam RNA recognition motif 2 682 778 IPR007201 -
Viun6g00612 840 MobiDBLite consensus disorder prediction 1 22 - -
Viun6g00612 840 FunFam Protein MEI2-like 1 271 366 - -
Viun6g00612 840 MobiDBLite consensus disorder prediction 7 22 - -
Viun6g00612 840 FunFam MEI2-like protein 5 isoform 2 176 270 - -
Viun6g00612 840 PANTHER RNA RECOGNITION MOTIF-CONTAINING 29 813 - -
Viun6g00612 840 CDD RRM3_MEI2_like 685 770 IPR034454 -
Viun6g00612 840 MobiDBLite consensus disorder prediction 373 402 - -
Viun6g00612 840 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 260 IPR000504 GO:0003723
Viun6g00612 840 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 274 339 IPR000504 GO:0003723
Viun6g00612 840 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 253 IPR000504 GO:0003723
Viun6g00612 840 Gene3D - 271 369 IPR012677 -
Viun6g00612 840 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 272 345 IPR000504 GO:0003723
Viun6g00612 840 CDD RRM2_MEI2_like 271 341 - -
Viun6g00612 840 SMART rrm1_1 684 760 IPR000504 GO:0003723
Viun6g00612 840 SMART rrm1_1 188 256 IPR000504 GO:0003723
Viun6g00612 840 SMART rrm1_1 273 341 IPR000504 GO:0003723
Viun6g00612 840 SUPERFAMILY RNA-binding domain, RBD 684 769 IPR035979 GO:0003676
Viun6g00612 840 MobiDBLite consensus disorder prediction 467 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00612 Viun-Chr6 16102974 16113255 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00612 182 358 Eukaryotic Initiation Factors Gene Family AT3G16380 25.758 3.06e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00612 - - gmx:100812324 1509.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g00612 6 16102974 16113255 Viun6g00612 6 16102974 16113255 ECH