Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00608 ATGGTTCACTCAACAACATGGTTCTTCTCACTTTTGGTATCCTTAACCATTCATTTATCAGGGATCGATTCCGCCAGAATAATGACTTTGATCAACCAATGCAACTACACGGTGTGGCCAGCTTTGAGCAATAGAACGGGGTTCGTTTTGGCCAGCGGCGAAAATTCCAGCGTCGGCGTACCCGAGAATTGGCAGGGTCGAATCTGGGCCCGCACACACTGCACCACCGACTCAGTTACCGGAAATTTTTCTTGCGCTACCGGCGACTGCAACTCCGGCAATCTAACGTGTAACAAAGAAGGGTCAGCGCCGGAGACGGTGGTGGAGTTTAACTTAGACGGAGTGAACGGGTCTGAGTTTTATTACGTGAGCTTGTTGCAAGGGTTCAACGTGCCGGTGATTGTTGATCCCGTGAGTGGTTCTGGCGGGAAGTGTGAGAGCACGGGTTGCGGGGTGGATTTGAACGCAGTGTGTCCAACGGAGCTAAAGGTAACGAGAAATGAGGAAGTGGTGGGTTGTGAGAACCCTTGCGATGGGAGCGATTCCTCGTGCGAGATATTCGAGACGGCATGTCCGCAAGCCTCCATTAACCCAGTCAGGCCCTTCAACTGTTCCAATCCTGCATACTACAACATTGTCTTCTGTCCTAAGTCTACCAATGCTAGTCAAAGGGTTGGTGACTCACTCATTGCTGGTAATGGGACATCTAAGTGGCTTTCTTCTTCAGGGGATTTTGCATTTGGCTTCTACCAACTTCCTAACAAGCTTTTCTTATTAGCTATATGGTACAACCATATACAAAATGGGAGCATCATTTGGTATGCAAATGGAGAAAACCTTGCTCCAATAGGATCAAAGTTAGAACTAAATGCTTCTCGAGGACTAGTACTCAGAACCCCAGAAGGTTTAGAGTTATGGAGATCAAATTTTACCTCAGGTCCAGTTTTTACTAGTCAAATGAATGATGATGGAAATTTTCAACTATTAGATCAAAATTTTGTTTCATTATGGGAGAGTTTCATTCATCCAACTGACACATTGGTTCCTACTCAAGCACTAGAGTTAGGTGGAGAACTTTTTTCTCGGCAAGGAGAGTTCAACTTCTCAACTGGAAGGTTCACACTTTATATGCAACAGGATGGGAATCTTGTGCTTAAGCTTATAAATTTGCTTAGCAATTATAGTAATGCTCCTTACTTTAATACTGGCACTGCTGATGCAAACAACAAAACAAATGTTGGCATGAGATTTGTGTTTGATAAATCAGGTTTCTTGTATGTACTGAAGAAAAGTGGGGAAAAGTTTAAAGTCAGCACATCAAACGAGACTATCTCTTCTAATGACGTCTACTACAAAGCAACACTCAATTTTGATGGAGTTTTGACTGTGTCATATTATCCCAAAGATCCAAACAAAGAACAAAGGTGGGTCACTTTAAAGACAATACCAGAAAATATTTGTCTAAATTCTACTATCATGGATGGTGGAGGAGTTTGTGGGTTTAATAGCATATGCAACCTGAAAGATGACCAGAGACCCATGTGTAACTGTCCAGAGAGATATTCTCTAATTGATTCAAATAACATGTATGGTGGTTGTATACCAAATTTCGAAGTCAATTGTGAAGGAGGTGGTCACATGAATTCACAAGATGATTACATCATGGAAGAGTTGCAAAACACTGATTGGCAAAAATCTGATTATAAAACGGTAAGTCCTTATACTCTAGAAGAGTGTACAAAATCTTGTTTACAAGATTGCTTATGTGTGTTGGTTACTTTTAGTGGAAGTTCTTGTCGGCAAATGAAGCTACCACTCATAAATGGGATAAGTGGTAAAGAAGTAAATGTCACTTCTATCATGAAATTGATGAAAAATGATGAGCTTTTAACTCCTTTACCGAAGCAAAAGATGAACAAAGATCATGATACCTTGATCATTGTGATATCTGTTCTTTTGGGCTTCTCCGTGTTTGTCATTTTCATGTTGGTTGGTGCAATGTATTTTTGTTTCTCCTACAACCGCAAGAAAATCAAAAGGGGTAGAACCAACGATGGTGTTGTTGAGAAAAACTTGCGTAACTTCACCTTCAAGGAACTTGTAGAAGCAACAAGAAACTTTAGTGAAGAATTGGGAAGGGGATCTTTTAGCATTGTCTACAAAGGAACAATAGACATAACAAGTGTGGCTGTTAAGAAATTAGACAAGTTGTTTGAAGATAATAACAAGGAATTTCAAACTGAAGTTAATGTAATAGGTCAAACTCATCATAGGAATCTGGTTCGTCTACTTGGATATTGCAATGAAGGACAACACAGAATCTTGGTGTATGAGTTTATGAGCAATGGAACTTTAGCAAGCTTCCTTTTCACACCATTGAAAGCAAATTGGAGACAACGATTTGACATTGCCTCAGGGATTGCTAGAGGTCTTGTTTACTTGCATGAGGAATGTTGCACCCAAATCATCCACTGTGACATAAAGCCACAAAATATACTTCTAGATGACCAATGTAATGCCAGAATTTCAGATTTTGGATTAGCAAAGTTGTTATTGATCAATCAAAGCCATACTGAAACTGCAATTAGAGGAACAAAAGGGTATGTTGCACCAGATTGGTTTAGAAGTTCACCAATCACTACTAAGGTTGACACTTATAGTTTTGGTGTGTTGTTATTAGAGATAATTTGTTGCAGGAGGAATGTGGAAAAGGAGATTATTGATGAAGAAAAAGGGATATTGACAGATTGGGCATATGACTGCTACAAGACTAGAAGACTAGACATTCTTCTAGAAAATGATGTTGAAGCTATTAATAACATTAAGAGTTTTGAAAAATTTGTCATGGTTGCTCTATGGTGCATTCATGAAGATCCCTCTCTTAGGCCAACAATGAAAAAGGTTTTGTTAATGTTGGAAGGCATTATTGATGTTTCAAAACCACCAAATCCCTACCTTTATACTTCTCTTAGTTAA 2976 0.3958 MVHSTTWFFSLLVSLTIHLSGIDSARIMTLINQCNYTVWPALSNRTGFVLASGENSSVGVPENWQGRIWARTHCTTDSVTGNFSCATGDCNSGNLTCNKEGSAPETVVEFNLDGVNGSEFYYVSLLQGFNVPVIVDPVSGSGGKCESTGCGVDLNAVCPTELKVTRNEEVVGCENPCDGSDSSCEIFETACPQASINPVRPFNCSNPAYYNIVFCPKSTNASQRVGDSLIAGNGTSKWLSSSGDFAFGFYQLPNKLFLLAIWYNHIQNGSIIWYANGENLAPIGSKLELNASRGLVLRTPEGLELWRSNFTSGPVFTSQMNDDGNFQLLDQNFVSLWESFIHPTDTLVPTQALELGGELFSRQGEFNFSTGRFTLYMQQDGNLVLKLINLLSNYSNAPYFNTGTADANNKTNVGMRFVFDKSGFLYVLKKSGEKFKVSTSNETISSNDVYYKATLNFDGVLTVSYYPKDPNKEQRWVTLKTIPENICLNSTIMDGGGVCGFNSICNLKDDQRPMCNCPERYSLIDSNNMYGGCIPNFEVNCEGGGHMNSQDDYIMEELQNTDWQKSDYKTVSPYTLEECTKSCLQDCLCVLVTFSGSSCRQMKLPLINGISGKEVNVTSIMKLMKNDELLTPLPKQKMNKDHDTLIIVISVLLGFSVFVIFMLVGAMYFCFSYNRKKIKRGRTNDGVVEKNLRNFTFKELVEATRNFSEELGRGSFSIVYKGTIDITSVAVKKLDKLFEDNNKEFQTEVNVIGQTHHRNLVRLLGYCNEGQHRILVYEFMSNGTLASFLFTPLKANWRQRFDIASGIARGLVYLHEECCTQIIHCDIKPQNILLDDQCNARISDFGLAKLLLINQSHTETAIRGTKGYVAPDWFRSSPITTKVDTYSFGVLLLEIICCRRNVEKEIIDEEKGILTDWAYDCYKTRRLDILLENDVEAINNIKSFEKFVMVALWCIHEDPSLRPTMKKVLLMLEGIIDVSKPPNPYLYTSLS 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00608 991 Gene3D Phosphorylase Kinase; domain 1 686 779 - -
Viun6g00608 991 FunFam Serine/threonine-protein kinase 344 490 - -
Viun6g00608 991 SMART blect_4 228 343 IPR001480 -
Viun6g00608 991 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 780 980 - -
Viun6g00608 991 SUPERFAMILY Osmotin, thaumatin-like protein 26 217 IPR037176 -
Viun6g00608 991 Pfam Protein kinase domain 708 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g00608 991 ProSitePatterns Protein kinases ATP-binding region signature. 711 733 IPR017441 GO:0005524
Viun6g00608 991 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 229 984 - -
Viun6g00608 991 Pfam Thaumatin family 32 180 IPR001938 -
Viun6g00608 991 Pfam D-mannose binding lectin 271 354 IPR001480 -
Viun6g00608 991 CDD STKc_IRAK 711 975 - -
Viun6g00608 991 Gene3D - 344 481 IPR036426 -
Viun6g00608 991 Gene3D Transferase(Phosphotransferase) domain 1 780 981 - -
Viun6g00608 991 SUPERFAMILY alpha-D-mannose-specific plant lectins 270 404 IPR036426 -
Viun6g00608 991 SUPERFAMILY Protein kinase-like (PK-like) 689 973 IPR011009 -
Viun6g00608 991 Gene3D Thaumatin 27 218 IPR037176 -
Viun6g00608 991 FunFam S-receptor-like serine/threonine-protein kinase 674 779 - -
Viun6g00608 991 ProSitePatterns Serine/Threonine protein kinases active-site signature. 822 834 IPR008271 GO:0004672|GO:0006468
Viun6g00608 991 ProSiteProfiles Thaumatin family profile. 25 216 IPR001938 -
Viun6g00608 991 ProSiteProfiles Bulb-type lectin domain profile. 220 341 IPR001480 -
Viun6g00608 991 ProSiteProfiles Protein kinase domain profile. 705 986 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g00608 991 SMART serkin_6 705 976 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g00608 991 PRINTS Pathogenesis-related protein signature 206 215 IPR001938 -
Viun6g00608 991 PRINTS Pathogenesis-related protein signature 119 135 IPR001938 -
Viun6g00608 991 PRINTS Pathogenesis-related protein signature 27 39 IPR001938 -
Viun6g00608 991 PRINTS Pathogenesis-related protein signature 67 78 IPR001938 -
Viun6g00608 991 SMART tha2 28 216 IPR001938 -
Viun6g00608 991 ProSitePatterns Thaumatin family signature. 81 97 IPR017949 -
Viun6g00608 991 Gene3D - 225 342 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00608 Viun-Chr6 16064586 16076600 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00608 691 974 Receptor kinase-like Gene Family AT1G60800 43.836 1.70e-68 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Viun6g00608 Pkinase 5.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00608 - - gmx:100796619 1470.29