Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00600 ATGGTGCCTCGTATTCTCATTATAACTAGAGTATTTGCGTCCTTCACACACTGCAGAAGCACCCAATTCCAATTGGGTTCTCTGCAGCAACACAAACACCATGCTTCTCTTTTTATGTTCAACACATTCACTTCTGCTGAGGACAGCCACAAAGGTGACACCTTTACTGTGTCTTACCTCAGCAACTCGTGTGGGTTGTCCCTGGAATTGGCCAGGAAACTCTCCAAGAGGGTGAATTTGAAAACCCCAAATGGTCCAAATGCTGTTCTTGACACTCTCAAGAACTATGGATTCTCCAAGTATCAGGTTGCAAAACTTGTTGAGAAAAATCCCAGGTTGCTTGTAGCAAGTGTGGAGAAGACCCTCTTGCCCAAACTCAAGTTCTTCAACTCTATTGGTGTTTCCAACACTGTCATCCATAAGATAGCGCATGAAAACCCCTTAATCTTGCTAAGGAGCCTGGGAAAATGCCTTGTGCCACGGTACGAGATTATCAGGAGTGTAGTTCGTGATGATCTGGAAGTTGTTAGAGTTTTGAAAAATGCCCCACTTGGTTTCACATATTGTGACCTATTGAATGACTTGGTACCTAACATCGGGATCCTGAGGCAGTATGGTGTGCCTCAGGGCTCAATCTCTCTGCTGATGGTCAACTTCCCCTCTGCAGCAATGGTGAAGCATTCAAGATTTGTGGAAGTTGTCGAGAGAGTTAAGAAATTTGGGTTTGATCATAAGAAAACAACTTTTGTCATGGCTATCCAAGTGCTTTTAACGATGCGTAAAGGGGCATGGGAATCCAGATTTGAGATTTATGAGAAGTGGGGCTGGAACTGGGAAATGACTCTTCAAGCGTTTGTGAAGTTTCCGAATTTTATGAAGTTGTCGGAGGAAACCATTACGAAGAAAATGACTTTCCTAGTGAAGGATATGGGTTTGTCATCATTAGATATTGCTGCATGTCCTCCTGTTCTGGCCTACAACTTGGAGAAGAGGATTATCCCTAGATTCTCGGAACATTTGCCTTTATTACCAGATGTCTACAACGGATTAATTCATCATGATGATGTTAAGTAA 1074 0.4292 MVPRILIITRVFASFTHCRSTQFQLGSLQQHKHHASLFMFNTFTSAEDSHKGDTFTVSYLSNSCGLSLELARKLSKRVNLKTPNGPNAVLDTLKNYGFSKYQVAKLVEKNPRLLVASVEKTLLPKLKFFNSIGVSNTVIHKIAHENPLILLRSLGKCLVPRYEIIRSVVRDDLEVVRVLKNAPLGFTYCDLLNDLVPNIGILRQYGVPQGSISLLMVNFPSAAMVKHSRFVEVVERVKKFGFDHKKTTFVMAIQVLLTMRKGAWESRFEIYEKWGWNWEMTLQAFVKFPNFMKLSEETITKKMTFLVKDMGLSSLDIAACPPVLAYNLEKRIIPRFSEHLPLLPDVYNGLIHHDDVK 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00600 357 PANTHER CGI-12 PROTEIN-RELATED 54 337 IPR003690 GO:0003690|GO:0006355
Viun6g00600 357 FunFam Mitochondrial transcription termination factor-like 154 339 - -
Viun6g00600 357 Pfam mTERF 90 246 IPR003690 GO:0003690|GO:0006355
Viun6g00600 357 Pfam mTERF 261 337 IPR003690 GO:0003690|GO:0006355
Viun6g00600 357 Gene3D Transcription termination factor 3, mitochondrial 171 343 IPR038538 -
Viun6g00600 357 SMART mt_12 282 313 IPR003690 GO:0003690|GO:0006355
Viun6g00600 357 SMART mt_12 314 345 IPR003690 GO:0003690|GO:0006355
Viun6g00600 357 SMART mt_12 140 171 IPR003690 GO:0003690|GO:0006355
Viun6g00600 357 SMART mt_12 247 277 IPR003690 GO:0003690|GO:0006355
Viun6g00600 357 SMART mt_12 104 135 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00600 Viun-Chr6 15893523 15896905 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Viun6g00600 mTERF 5.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00600 K15032 - gmx:100813396 456.447