Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00599 ATGGTGCCTCGTATTCTCATTATAACTAGAGTATTTGCGTCCTTCACACACTGCAGAAGCACCCAATTCCAATTGGGTTCTCTGCAGCAACACAAACACCATGCTTCTCTTTTTATGTTCAACACATTCACTTCTGCTGAGGACAGCCACAAAGGTGACACCTTTACTGTGTCTTACCTCAGCAACTCGTGTGGGTTGTCCCTGGAATTGGCCAGGAAACTCTCCAAGAGGGTGAATTTGAAAACCCCAAATGGTCCAAATGCTGTTCTTGACACTCTCAAGAACTATGGATTCTCCAAGTATCAGGTTGCAAAACTTGTTGAGAAAAATCCCAGGTTGCTTGTAGCAAGTGTGGAGAAGACCCTCTTGCCCAAACTCAAGTTCTTCAACTCTATTGGTGTTTCCAACACTGTCATCCATAAGATAGCGCATGAAAACCCCTTAATCTTGCTAAGGAGCCTGGGAAAATGCCTTGTGCCACGGTACGAGATTATCAGGAGTGTAGTTCGTGATGATCTGGAAGTTGTTAGAGTTTTGAAAAATGCCCCACTTGGTTTCACATATTGTGACCTATTGAATGACTTGGTACCTAACATCGGGATCCTGAGGCAGTATGGTGTGCCTCAGGGCTCAATCTCTCTGCTGATGGTCAACTTCCCCTCTGCAGCAATGGTGAAGCATTCAAGATTTGTGGAAGTTGTCGAGAGAGTTAAGAAATTTGGGTTTGATCATAAGAAAACAACTTTTGTCATGGCTATCCAAGTGCTTTTAACGATGCGTAAAGGGGCATGGGAATCCAGATTTGAGATTTATGAGAAGTGGGGCTGGAACTGGGAAATGACTCTTCAAGCGTTTGTGAAGTTTCCGAATTTTATGAAGTTGTCGGAGGAAACCATTACGAAGAAAATGACTTTCCTAGTGAAGGATATGGGTTTGTCATCATTAGATATTGCTGCATGTCCTCCTGTTCTGGCCTACAACTTGGAGAAGAGGATTATCCCTAGATTCTCGGTAATTAAAATTTTGAAATCAAAAAATTTGCTTAAGAGCAATATGAGTTTCAGTTCCTATATGGGCTTTACCGAGGAAATCTTTTTGAAGAAATTTGTCATTGATTTCCAGGAACATTTGCCTTTATTACCAGATGTCTACAACGGATTAATTCATCATGATGATGTTAAGTAA 1185 0.416 MVPRILIITRVFASFTHCRSTQFQLGSLQQHKHHASLFMFNTFTSAEDSHKGDTFTVSYLSNSCGLSLELARKLSKRVNLKTPNGPNAVLDTLKNYGFSKYQVAKLVEKNPRLLVASVEKTLLPKLKFFNSIGVSNTVIHKIAHENPLILLRSLGKCLVPRYEIIRSVVRDDLEVVRVLKNAPLGFTYCDLLNDLVPNIGILRQYGVPQGSISLLMVNFPSAAMVKHSRFVEVVERVKKFGFDHKKTTFVMAIQVLLTMRKGAWESRFEIYEKWGWNWEMTLQAFVKFPNFMKLSEETITKKMTFLVKDMGLSSLDIAACPPVLAYNLEKRIIPRFSVIKILKSKNLLKSNMSFSSYMGFTEEIFLKKFVIDFQEHLPLLPDVYNGLIHHDDVK 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00599 394 Gene3D Transcription termination factor 3, mitochondrial 171 377 IPR038538 -
Viun6g00599 394 FunFam Mitochondrial transcription termination factor-like 154 377 - -
Viun6g00599 394 PANTHER CGI-12 PROTEIN-RELATED 54 371 IPR003690 GO:0003690|GO:0006355
Viun6g00599 394 SMART mt_12 282 313 IPR003690 GO:0003690|GO:0006355
Viun6g00599 394 SMART mt_12 314 348 IPR003690 GO:0003690|GO:0006355
Viun6g00599 394 SMART mt_12 140 171 IPR003690 GO:0003690|GO:0006355
Viun6g00599 394 SMART mt_12 247 277 IPR003690 GO:0003690|GO:0006355
Viun6g00599 394 SMART mt_12 104 135 IPR003690 GO:0003690|GO:0006355
Viun6g00599 394 Pfam mTERF 261 365 IPR003690 GO:0003690|GO:0006355
Viun6g00599 394 Pfam mTERF 90 246 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00599 Viun-Chr6 15893523 15896907 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Viun6g00599 mTERF 7.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00599 K15032 - gmx:100813396 505.368