Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00598 ATGGTGCCTCGTATTCTCGTTACTAGACTATTTGCGTCCTTCACAAACTGCAGAAGCACCCAATTCCAATGGGGTTCTCTGCTGCAACACAAACACGATGCTTCTCTTTTTATGTTCAACACATTCACTTCTGGTGGGGACAGCCACAAAGGTGACACCTTTACAGTGTCTTACCTCAGCAACTCGTGTGGGTTGTCCCTGGAATTGGCCAGGAAACTCTCCAAGAGGGTGAATTTGAAAACCCCAGATGGTCCAAATGCTGTTCTTGACACTCTCAAGAACTATGGATTCTCCAAAACTCAGGTTGCAAAAGTCGTCGAGAAGAATCCCAGGTTGCTTGCAGCCAGTGCGGAGAAGACCCTCTTGCCCAAACTCAAGTTCTTCAACTCTATTGGTGTTTCCAACAGTATCATCCATAGGATTGCGCTTGAAGACCCTGTCATCTTGCAGAGGAGTCTGGAAAAATGCCTTGTGCCACGATACGAGATTATCAGGAGTATAGTTCGTGATGATCGGAAGGTTGTTAGTGTTTTGAGAAATGTCCCACTTGGTTTCACAAATTGTGACCTAAAGAAATGCTTGGTTCCAAACATCGAGATCCTGAGGCAGTCTGGGGTTCCTCAGGGTTCAATCTCTCTGATGATGGTCAACGCCACCTCTTCAGCAATGGTGAAGCATTCAAGATTTGTGGAAGTTGTCGAGAGAATTAAGAAATTAGGGTTTGATCCTAAGAAAACAACTTTTGTCATGGCTATTGATGTGCTTTTAGCGATAAGTAAAGGGGGATGGGAATCGAGAATTCAGATGTATGAGAGGTGGGGCTGGAACTGCGAATTGGCTCTTCAAGCGTTTCTGAAGTTTCCCAATTTTATGAAGTTGTCGGAGGAGACAGTTAACAAAAAAATGACTTTCCTAGTGAAGGATATGGGTTTGTCATCATTAGATATTGCTGCATATCCTCCTGTTCTGGCCTACAGCTTGGAGAAGAGGATTATCCCTAGACTCTCAGTAATTAAAATTTTGAAATCAAAAGGTTTGCTTAAGAGTAATTTGAGTTTTGGTTCCTATATGGGCTCTACCGAGGAAATATTTTTGAAGAAATTTGTCATTGGTTTCCAGGAACATTTGCCTTTATTACCAGATGTCTACAAAGGATTAATTCATCATGATGATGTTATGTAG 1182 0.4247 MVPRILVTRLFASFTNCRSTQFQWGSLLQHKHDASLFMFNTFTSGGDSHKGDTFTVSYLSNSCGLSLELARKLSKRVNLKTPDGPNAVLDTLKNYGFSKTQVAKVVEKNPRLLAASAEKTLLPKLKFFNSIGVSNSIIHRIALEDPVILQRSLEKCLVPRYEIIRSIVRDDRKVVSVLRNVPLGFTNCDLKKCLVPNIEILRQSGVPQGSISLMMVNATSSAMVKHSRFVEVVERIKKLGFDPKKTTFVMAIDVLLAISKGGWESRIQMYERWGWNCELALQAFLKFPNFMKLSEETVNKKMTFLVKDMGLSSLDIAAYPPVLAYSLEKRIIPRLSVIKILKSKGLLKSNLSFGSYMGSTEEIFLKKFVIGFQEHLPLLPDVYKGLIHHDDVM 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00598 393 PANTHER CGI-12 PROTEIN-RELATED 53 370 IPR003690 GO:0003690|GO:0006355
Viun6g00598 393 FunFam Mitochondrial transcription termination factor-like 153 376 - -
Viun6g00598 393 Gene3D Transcription termination factor 3, mitochondrial 165 375 IPR038538 -
Viun6g00598 393 SMART mt_12 313 347 IPR003690 GO:0003690|GO:0006355
Viun6g00598 393 SMART mt_12 139 170 IPR003690 GO:0003690|GO:0006355
Viun6g00598 393 SMART mt_12 281 312 IPR003690 GO:0003690|GO:0006355
Viun6g00598 393 SMART mt_12 103 134 IPR003690 GO:0003690|GO:0006355
Viun6g00598 393 Pfam mTERF 262 364 IPR003690 GO:0003690|GO:0006355
Viun6g00598 393 Pfam mTERF 89 244 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00598 Viun-Chr6 15885211 15887081 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Viun6g00598 mTERF 5.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00598 K15032 - gmx:100813396 483.026