Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00597 ATGGTGCCTCGTATTCTCGTTACTAGACTATTTGCGTCCTTCACAAACTGCAGAAGCACCCAATTCCAATGGGGTTCTCTGCTGCAACACAAACACGATGCTTCTCTTTTTATGTTCAACACATTCACTTCTGGTGGGGACAGCCACAAAGGTGACACCTTTACAGTGTCTTACCTCAGCAACTCGTGTGGGTTGTCCCTGGAATTGGCCAGGAAACTCTCCAAGAGGGTGAATTTGAAAACCCCAGATGGTCCAAATGCTGTTCTTGACACTCTCAAGAACTATGGATTCTCCAAAACTCAGGTTGCAAAAGTCGTCGAGAAGAATCCCAGGTTGCTTGCAGCCAGTGCGGAGAAGACCCTCTTGCCCAAACTCAAGTTCTTCAACTCTATTGGTGTTTCCAACAGTATCATCCATAGGATTGCGCTTGAAGACCCTGTCATCTTGCAGAGGAGTCTGGAAAAATGCCTTGTGCCACGATACGAGATTATCAGGAGTATAGTTCGTGATGATCGGAAGGTTGTTAGTGTTTTGAGAAATGTCCCACTTGGTTTCACAAATTGTGACCTAAAGAAATGCTTGGTTCCAAACATCGAGATCCTGAGGCAGTCTGGGGTTCCTCAGGGTTCAATCTCTCTGATGATGGTCAACGCCACCTCTTCAGCAATGGTGAAGCATTCAAGATTTGTGGAAGTTGTCGAGAGAATTAAGAAATTAGGGTTTGATCCTAAGAAAACAACTTTTGTCATGGCTATTGATGTGCTTTTAGCGATAAGTAAAGGGGGATGGGAATCGAGAATTCAGATGTATGAGAGGTGGGGCTGGAACTGCGAATTGGCTCTTCAAGCGTTTCTGAAGTTTCCCAATTTTATGAAGTTGTCGGAGGAGACAGTTAACAAAAAAATGACTTTCCTAGTGAAGGATATGGGTTTGTCATCATTAGATATTGCTGCATATCCTCCTGTTCTGGCCTACAGCTTGGAGAAGAGGATTATCCCTAGACTCTCAGTAATTAAAATTTTGAAATCAAAAGGTTTTTGA 1041 0.4361 MVPRILVTRLFASFTNCRSTQFQWGSLLQHKHDASLFMFNTFTSGGDSHKGDTFTVSYLSNSCGLSLELARKLSKRVNLKTPDGPNAVLDTLKNYGFSKTQVAKVVEKNPRLLAASAEKTLLPKLKFFNSIGVSNSIIHRIALEDPVILQRSLEKCLVPRYEIIRSIVRDDRKVVSVLRNVPLGFTNCDLKKCLVPNIEILRQSGVPQGSISLMMVNATSSAMVKHSRFVEVVERIKKLGFDPKKTTFVMAIDVLLAISKGGWESRIQMYERWGWNCELALQAFLKFPNFMKLSEETVNKKMTFLVKDMGLSSLDIAAYPPVLAYSLEKRIIPRLSVIKILKSKGF 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00597 346 Gene3D Transcription termination factor 3, mitochondrial 165 346 IPR038538 -
Viun6g00597 346 PANTHER CGI-12 PROTEIN-RELATED 53 345 IPR003690 GO:0003690|GO:0006355
Viun6g00597 346 FunFam Mitochondrial transcription termination factor-like 153 346 - -
Viun6g00597 346 SMART mt_12 139 170 IPR003690 GO:0003690|GO:0006355
Viun6g00597 346 SMART mt_12 313 344 IPR003690 GO:0003690|GO:0006355
Viun6g00597 346 SMART mt_12 281 312 IPR003690 GO:0003690|GO:0006355
Viun6g00597 346 SMART mt_12 103 134 IPR003690 GO:0003690|GO:0006355
Viun6g00597 346 Pfam mTERF 263 345 IPR003690 GO:0003690|GO:0006355
Viun6g00597 346 Pfam mTERF 89 244 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00597 Viun-Chr6 15884145 15887081 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Viun6g00597 mTERF 4.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00597 K15032 - gmx:100813396 449.129