Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00596 ATGTCAGCAAACAATTCTTTGCATGTGGAATTATCGAAGAAGACTTCGTTTCTGGGATTGAAATTATGGGTTTTGATTGGGATTGGTGTTGGCGCTTTTATAGTTCTGATTCTTTGTGCATTATCCGTATGGGTGATGTTCCGGAGAAAGTCTAGGAGATCTCTGGACAAGTTCTCTTTGTCACAAATACCGCGTGTCTCAAAAGACATCAGTGTTGACAAGGTTGGGGTGCAGAATTCTTATGATCAAGCAGAAAATGTAGCAATTCCTGTTCATGACAAAGCAAGTGAGAACAATTCTGACAAGTTCTTAGTTCATTTGCGCAAAAGCAAATCCAGCGATGCTGATAATATCAGTCAGTGCAGCTCAGTTTATCATCATGAGAGGGGATTTAGTTCAATGTCAGGGGAAGAAGGAAGCTCTGGCACTGTTAAGAAGCAATCTGCATTGGCATTTGGAGGTGTGGTAACTGCCTCTCCTCTAGTTGGCTTACCAGAAATTTCTCATCTTGGGTGGGGTCACTGGTTCACTCTAAGAGATCTGGAACTTGCAACTAATCGATTCTCTCCGGAGAATGTGATTGGTGAGGGTGGATATGGGGTTGTATACAGGGGAAGATTGATCAATGGATCCGAGGTGGCGGTTAAGAAAATTCTTAACAACTTGGGACAAGCAGAGAAAGAGTTCAGGGTGGAAGTGGAAGCTATTGGCCATGTCAGACATAAAAATCTTGTGCGCTTACTTGGTTATTGCGTAGAAGGAGTTCACAGGTTACTGGTGTATGAATATGTGAACAATGGTAACTTAGAACAATGGCTACATGGGGCTATGAGCCAACAAGGAATACTTACCTGGGAAGCTCGGATGAAAGTTATAACTGGCACAGCCAAAGCACTGGCTTATTTACATGAAGCAATAGAACCGAAAGTCGTTCACCGGGATATCAAGTCTAGCAACATATTGATCGATACCGAGTTCAATGCAAAAGTTTCTGACTTTGGTTTGGCCAAACTTTTGGACTCAGGAGAAAGTCACATTACTACTAGAGTAATGGGAACATTTGGCTATGTGGCACCAGAATATGCCAATACGGGTTTGTTAAATGAGAGGAGTGACATTTACAGCTTTGGTGTTCTCCTGCTAGAAGCAGTTACTGGAAGGGATCCTGTGGACTACTCACGTCCTGCTAATGAGGTGAATCTTGTTGAATGGCTCAAGATGATGGTGGGGACAAGAAGGGCTGAGGAAGTTGTGGATTCAAGGCTTGAAGTGAAACCATCAACACGCGCTTTAAAGCGTTCTCTTCTGGTTGCACTTAAGTGTGTTGATCCTGAAGCAGAAAAGAGGCCTAAAATGAGTCAGGTTGTGAGAATGCTTGAAGCCGATGAATATCCATTCCGAGAGGATCGAAGAAATAGAAAGAGCCGCACAATCAGCATGGAAATTGAGTCTCTGAAGGATATTTCTGGTCCATCTGGTGCTGAAAAGGTGAAGGGTTCTGAAAGCCATGCACCAGAAACAACTCAAGGGTAG 1533 0.4331 MSANNSLHVELSKKTSFLGLKLWVLIGIGVGAFIVLILCALSVWVMFRRKSRRSLDKFSLSQIPRVSKDISVDKVGVQNSYDQAENVAIPVHDKASENNSDKFLVHLRKSKSSDADNISQCSSVYHHERGFSSMSGEEGSSGTVKKQSALAFGGVVTASPLVGLPEISHLGWGHWFTLRDLELATNRFSPENVIGEGGYGVVYRGRLINGSEVAVKKILNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCVEGVHRLLVYEYVNNGNLEQWLHGAMSQQGILTWEARMKVITGTAKALAYLHEAIEPKVVHRDIKSSNILIDTEFNAKVSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANTGLLNERSDIYSFGVLLLEAVTGRDPVDYSRPANEVNLVEWLKMMVGTRRAEEVVDSRLEVKPSTRALKRSLLVALKCVDPEAEKRPKMSQVVRMLEADEYPFREDRRNRKSRTISMEIESLKDISGPSGAEKVKGSESHAPETTQG 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00596 510 Gene3D Phosphorylase Kinase; domain 1 170 263 - -
Viun6g00596 510 PANTHER OS01G0323000 PROTEIN 1 480 - -
Viun6g00596 510 CDD STKc_IRAK 194 460 - -
Viun6g00596 510 Pfam Protein kinase domain 191 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g00596 510 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Viun6g00596 510 ProSitePatterns Protein kinases ATP-binding region signature. 194 217 IPR017441 GO:0005524
Viun6g00596 510 FunFam Putative receptor-like protein kinase 170 263 - -
Viun6g00596 510 SUPERFAMILY Protein kinase-like (PK-like) 172 461 IPR011009 -
Viun6g00596 510 MobiDBLite consensus disorder prediction 466 510 - -
Viun6g00596 510 MobiDBLite consensus disorder prediction 466 481 - -
Viun6g00596 510 ProSiteProfiles Protein kinase domain profile. 188 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g00596 510 SMART serkin_6 188 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g00596 510 Gene3D Transferase(Phosphotransferase) domain 1 264 477 - -
Viun6g00596 510 FunFam Putative receptor-like serine/threonine-protein kinase 264 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00596 Viun-Chr6 15878982 15883600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00596 19 462 Trihelix Transcription Factor Family AT1G70460 39.866 1.16e-96 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Viun6g00596 Pkinase 3.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00596 - - gmx:100813931 935.25