Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00571 ATGAATGCTAAAGTACAAGACTCTGATGATACCAAAAAGGGTGAAGAAGTCGTGCTTCCTGGCTTTAGATTTCACCCTACAGATGAAGAACTTGTTGGGTTTTATCTGCAGAGAAAGGTGGAAAAAAAGCCTCTCAAAATTGAACTCATCAAACAGGTCGATATCTACAAATATGATCCATGGGATCTTCCAAAGGTGAATTCAATTGGGGAGAAAGAATGGTACTTTTTCTGCATAAGAGGGAGGAAGTACAGGAACAGTGTGAGGCCAAACAGGGTAACAAGGTCAGGGTTTTGGAAAGCCACAGGAATAGATAAGTCGATATACTGCGTGAAGGAACCCCATGAATGCATTGGCCTCAAGAAGTCTTTGGTGTACTATCGTGGAAGTGCTGGAAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGTCTTCCACCCAACATTGCTAATGTTACCAATAACCTTCATGAAGCTGAGGTGTGGACACTGTGCAGGATATTCAAACGCATCCCATCTTTCAAAAAGTACACTCCAAATTTGAAAGACACAAAAAGCAACACTGTGAATTCGAATACAAGCACCATAGATTCTGACAATTGCAAGCCATATTTGATCTGCAGAGACACTGAGATGATGCAACAACTGAAGCCAGTTTTCGGACAGGTCGATGAAAAGAAACACTTGTATCTTCAACCTCCATCTTCAACCCCTTACCCAACATTTTGGAACCACAATGTTGAAGACTATACATTTGCCAATGAGAATTGGGATGATCTCAGATCTGTGGTTCAGTTCGCCATTCACCCTTCCTCAGTCTTTGATTGTACAGAAACACATTTTCCACCCTACTTTTCTTAG 864 0.4144 MNAKVQDSDDTKKGEEVVLPGFRFHPTDEELVGFYLQRKVEKKPLKIELIKQVDIYKYDPWDLPKVNSIGEKEWYFFCIRGRKYRNSVRPNRVTRSGFWKATGIDKSIYCVKEPHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNIANVTNNLHEAEVWTLCRIFKRIPSFKKYTPNLKDTKSNTVNSNTSTIDSDNCKPYLICRDTEMMQQLKPVFGQVDEKKHLYLQPPSSTPYPTFWNHNVEDYTFANENWDDLRSVVQFAIHPSSVFDCTETHFPPYFS 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00571 287 ProSiteProfiles NAC domain profile. 18 171 IPR003441 GO:0003677|GO:0006355
Viun6g00571 287 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 214 - -
Viun6g00571 287 Pfam No apical meristem (NAM) protein 20 146 IPR003441 GO:0003677|GO:0006355
Viun6g00571 287 SUPERFAMILY NAC domain 14 170 IPR036093 GO:0003677|GO:0006355
Viun6g00571 287 Gene3D NAC domain 27 174 IPR036093 GO:0003677|GO:0006355
Viun6g00571 287 FunFam NAC domain-containing protein 35 27 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00571 Viun-Chr6 15102700 15108635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00571 6 209 NAC Transcription Factor Family AT5G39820 51.293 7.35e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun6g00571 NAM 1.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00571 - - gmx:100819795 501.901