Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00555 ATGGTGCCCAATTTTTTCATTTCAAGATTAGTTGCATCATCATTCACTGGCTACAAGGGTAGCCATCTTCTATTGGGTTCTCTGCTTCCTTGCAAACACACTGCTTCACTTGTTTTCTTCAATTATTTCACTTCAAGCACTTCCTCTGATTCTAAATCAGATGGAAAGCAACACAGAGGTTCCACCTTTACTGTGTCTTACCTCATCAACTCATGTGGGTTGTCCCAAACTCTGGCTAGGGAACTCTCCAACAGGGTCAATTTGAAAACCCCAGATGGCCCAAATGCTGTCATTGATATCCTCAGCAACTATGGGTTCTCAAAATCCCAGCTTGCAAAGCTTGTGGTGAGACATCCTTCCGTGCTATTTGCAAAAGTAGAGGATACCCTTTTGCCTAAACTCGAGTTCTTTCGTTCTATTGGGCTGTCCAACACTGACATACCTAAGATCCTGATTGCCAACCATGGTATCTTGAAGAGGCACTTGGAAAACTGCATCATCCCTCGCTATGAGATCCTAAAGAGTGTAGTTCATGCTGATCGGGAAGTTGTTAGAACTATTAAAAATGCCCCACTTGGTTTTGTGTATGGTGACTTAATGAATAGGTTGGTTCCAAACATTGACATTTTGAGGGAATATGGTGTGCCTCAGGCTTCCATCAGTCACCTGGTGACTAATTCTCTGTCTGCAGCATATGTGGAGCATTCGAGGTTTGTGGAAGCTATCAAGAGAGCTAAGGAAATTGGATTTAGTCCTTTGAAAATGGACTTTGTTGTTGCTATTCACGTGCTTGTAACTATGAGGAAAGAAGTGTGGGAGTCAAGGTTTCAGGTTTATGAAAAGTGGGGCTGGAACCGGGATATGGCTCTTCGAGCATTTAGGAAGTTTCCCAGTTTCATGAAGTTTTCAGGGGAGACATTTTCCAGAAAGATGAGTTTCCTTGTGAAGGATATGGGTTGGCCATCAGAAGCTATTGCTGAATATCCTCTTGTTGTAGCCTACAGCTTGGAGAAGAGGATTATTCCTAGATTCTCTGTAATTAAAATCTTGAAATCAAAAGGTCTTCTTGAGAAAAACGTGCACTTTAGTTCCATTATTTGCACAACTGAGGAAAAGTTCTTGGAGAAATTTGTCGTCAATTTTCAGGATGCTTTGCCCCTCTTACCAGACCTCTACAGAGGTTTCCTCAATCAATCTAATGTAGTGTAG 1209 0.4194 MVPNFFISRLVASSFTGYKGSHLLLGSLLPCKHTASLVFFNYFTSSTSSDSKSDGKQHRGSTFTVSYLINSCGLSQTLARELSNRVNLKTPDGPNAVIDILSNYGFSKSQLAKLVVRHPSVLFAKVEDTLLPKLEFFRSIGLSNTDIPKILIANHGILKRHLENCIIPRYEILKSVVHADREVVRTIKNAPLGFVYGDLMNRLVPNIDILREYGVPQASISHLVTNSLSAAYVEHSRFVEAIKRAKEIGFSPLKMDFVVAIHVLVTMRKEVWESRFQVYEKWGWNRDMALRAFRKFPSFMKFSGETFSRKMSFLVKDMGWPSEAIAEYPLVVAYSLEKRIIPRFSVIKILKSKGLLEKNVHFSSIICTTEEKFLEKFVVNFQDALPLLPDLYRGFLNQSNVV 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00555 402 SMART mt_12 112 143 IPR003690 GO:0003690|GO:0006355
Viun6g00555 402 SMART mt_12 322 356 IPR003690 GO:0003690|GO:0006355
Viun6g00555 402 SMART mt_12 148 180 IPR003690 GO:0003690|GO:0006355
Viun6g00555 402 SMART mt_12 290 321 IPR003690 GO:0003690|GO:0006355
Viun6g00555 402 SMART mt_12 184 216 IPR003690 GO:0003690|GO:0006355
Viun6g00555 402 SMART mt_12 255 285 IPR003690 GO:0003690|GO:0006355
Viun6g00555 402 Gene3D Transcription termination factor 3, mitochondrial 193 383 IPR038538 -
Viun6g00555 402 Pfam mTERF 98 305 IPR003690 GO:0003690|GO:0006355
Viun6g00555 402 Pfam mTERF 265 374 IPR003690 GO:0003690|GO:0006355
Viun6g00555 402 FunFam Mitochondrial transcription termination factor-like 162 385 - -
Viun6g00555 402 PANTHER CGI-12 PROTEIN-RELATED 61 379 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00555 Viun-Chr6 14752260 14754013 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Viun6g00555 mTERF 8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00555 K15032 - gmx:100786641 607.831