Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00550 ATGGGTTCCAAAGACAAGCATGAAGATGAGGAATCACTTAGTATAGGCCTAAAGGTGATGCTAGCAGCAGCTATCTTTTTATTTTGTATGATCTCAATAATCATCATCTTCCATTTTAGTATGAAATATTTCATCAGACGGCAACGAAGGAGACGCCAAAACGAGCTTCTTCACCAGATCACCACTCAGATTGCACCGATTGATGTGAGTTTTGTGGAGGCACGCAACCCTGGACTTCAAACTTCCATCATAGCCTCTCTGCCTAAACTTTTGTACAACCAAACGGAACAGTTCAAGCAAGGTGAAGTGACAGAGTGTTCGGTTTGCCTAGCCACTGTTACTAAGGATGCAATTATCAGAGTGCTACCAAATTGTAAGCACATTTTTCATGTTGATTGTGTTGATAAATGGTTTAATTGTAACTCCACATGCCCAATTTGCTACAATGTGGTTGACCCTAAGGTGGCATCAGAAGAAGAAGATGGTGATTTAGGCACAAGGATCCACCAAGTCCAACCCACAGCACCACCTGTTGTGGGTGGTGGTGAGGTGCAAGATGGAACTGAAATGGAAAAGGTGTAA 582 0.4261 MGSKDKHEDEESLSIGLKVMLAAAIFLFCMISIIIIFHFSMKYFIRRQRRRRQNELLHQITTQIAPIDVSFVEARNPGLQTSIIASLPKLLYNQTEQFKQGEVTECSVCLATVTKDAIIRVLPNCKHIFHVDCVDKWFNCNSTCPICYNVVDPKVASEEEDGDLGTRIHQVQPTAPPVVGGGEVQDGTEMEKV 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00550 193 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 18 158 - -
Viun6g00550 193 SMART ring_2 106 147 IPR001841 -
Viun6g00550 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 153 IPR013083 -
Viun6g00550 193 Pfam Ring finger domain 105 147 IPR001841 -
Viun6g00550 193 ProSiteProfiles Zinc finger RING-type profile. 106 147 IPR001841 -
Viun6g00550 193 SUPERFAMILY RING/U-box 89 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00550 Viun-Chr6 14582046 14583078 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00550 9 166 C3H Transcription Factor Family AT2G42360 34.375 2.07e-25 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00550 K19038 - gmx:100779105 258.455