Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00542 ATGCACCATTTTCTGCTTGCTAGATTAACAACTAGGACTCCTCACTTTGGTGTTCTTTGTCACAATGTCATTCTTTTCTTCAATTCACGCACTTTATCTGTGTCAAACACAAATCATCACAAAGGTGGCACCTTTAATGCATTTAGCATCATCAATTCATGTGGGTTGTCCCCTGAAAAGGCACTGGAAATCTCCAAAAGGTTGAAATTGAAAAACCCAGATGGGGCAAATGCTGCAATTGATCTTCTCAGGAACCATGGGTTCTCAGAGAGCCAGCTATGTAGCCTTGTAAAGAAATTCCCTTCCGTGCTTTTGTCAAATTCAGACAAGATCCTTTTGCCAAAACTCAAGTTCTTTCGTTCTATTGGGTTTTCAGCCACTGACCTTCCCAAATTCCTCGTTATGAAACCTACATTTCTGAAATCAAGCTTGGAGAAAACCATTATCCCTTGTTATGGGGTAATCAGAAGTCTAGTTCGCAATGATAATGAAGCAGTTTCCACTTTAAAGCATGGGCTGTGGCACTGTAGCAGCAATGTGGTGAATAATTCACTTCCAAACATAGAGGCTTTGAGACAGCTTGGTCTGCCTCAAAGCTCCATTTCTCTCCTGGTAGCCAATTTTCCTAGTGTCACATTTATGAAGCATGCAAAGTTTGTTGAAGCTGTGGAGAAAGTGAGGGAACTGGGGTTTGATCCTTCGAAAACAAATTTTGTTATGGCACTAAAAGTTTTTGCAGATATGAGTGAAGCATCATGGAAATCGAAGTTCGAGGTTTTGGAGAAGTGTGGCTGGTCAAGTGATGTCTTTCTTTTAGCTTTCAAGAAGCATCCCCAGTTTATGGTCTCATCAGAACACAAGATTCTGAAAATAATGAGCTTTTTGATGAAGGATATGGGTTTGGCACCCAAAGAAATTGCTAGATGCCCTGCGCTTCTTAAATGCAACTTGGAGAAGACAGTTATCCCTAGATTTGCAGTGGTTAAAATTTTGAAGAGAAGGGGTTTGGTAAAGAGTGATTTGCAAATAAGTACCTTTATTAAGATCAGTGAGAAATTGTTTTTGAAGAAATATGTGACTCGATTTCAGAGTCATGAGCCATTAGTTTTGGCTGCATACAAAGTTAACTTGTAA 1134 0.3968 MHHFLLARLTTRTPHFGVLCHNVILFFNSRTLSVSNTNHHKGGTFNAFSIINSCGLSPEKALEISKRLKLKNPDGANAAIDLLRNHGFSESQLCSLVKKFPSVLLSNSDKILLPKLKFFRSIGFSATDLPKFLVMKPTFLKSSLEKTIIPCYGVIRSLVRNDNEAVSTLKHGLWHCSSNVVNNSLPNIEALRQLGLPQSSISLLVANFPSVTFMKHAKFVEAVEKVRELGFDPSKTNFVMALKVFADMSEASWKSKFEVLEKCGWSSDVFLLAFKKHPQFMVSSEHKILKIMSFLMKDMGLAPKEIARCPALLKCNLEKTVIPRFAVVKILKRRGLVKSDLQISTFIKISEKLFLKKYVTRFQSHEPLVLAAYKVNL 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00542 377 Gene3D Transcription termination factor 3, mitochondrial 157 365 IPR038538 -
Viun6g00542 377 FunFam Mitochondrial transcription termination factor-like 144 365 - -
Viun6g00542 377 SMART mt_12 130 161 IPR003690 GO:0003690|GO:0006355
Viun6g00542 377 SMART mt_12 271 302 IPR003690 GO:0003690|GO:0006355
Viun6g00542 377 SMART mt_12 94 125 IPR003690 GO:0003690|GO:0006355
Viun6g00542 377 SMART mt_12 303 337 IPR003690 GO:0003690|GO:0006355
Viun6g00542 377 SMART mt_12 202 232 IPR003690 GO:0003690|GO:0006355
Viun6g00542 377 SMART mt_12 236 266 IPR003690 GO:0003690|GO:0006355
Viun6g00542 377 PANTHER CGI-12 PROTEIN-RELATED 49 361 IPR003690 GO:0003690|GO:0006355
Viun6g00542 377 Pfam mTERF 292 354 IPR003690 GO:0003690|GO:0006355
Viun6g00542 377 Pfam mTERF 80 297 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00542 Viun-Chr6 14247815 14250444 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Viun6g00542 mTERF 8.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00542 K15032 - gmx:106799612 531.176