Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00539 ATGAAGAATTCTAAGAAAACGGGTGTACGGAAATACCAAAAATCAGAAAATCCACGTCTGCGATGGACACCTGAACTCCATGAATACTTTGTAGAAGTTGTGGAAGGTCTTGGTGGAAAAAACAAGGCAACTCCAAAGAGCATTCTGCAGATGATGCATGTGAAAGGACTAAGAATCTCTCACATTAAAAGCCATCTTCAGATGTACAGGAACCTTAAGGGACATACGATTCTCTCATCAATGCATCAGGAGATGGAAGGGAATGAAGATTATAAAGATCTTCCAATGTGCTCCAATTGTTCATCCCAAAGATCACAAGAAGCAAAATTTAGGGCAACAAAATATGATATGGGAATTGTGACTCAAGAAATTCGCCCGTCAGAAAATAAAGGACTTTCACAAACCAGTGAAACAGATTATGATCTAAACCAGGAACCCGAATCATGTGCATACATACATAGTGATACTTCAAATGAAGAAAATAGTAGAAGAATGAAATTTCTTGATTTCACATTCTCTTTTAGTTCTGCACTAATTCCAACCATGCATGGTAATCAAGAGAGGATGCATTTTTCTTCACCAAATGCAGCAGATAATCATGCCGTCGATTCTAATTCTGTACAACCTCATGGGAGCAACAACTACATAAATTTAGACCTAGCAATATGA 669 0.3767 MKNSKKTGVRKYQKSENPRLRWTPELHEYFVEVVEGLGGKNKATPKSILQMMHVKGLRISHIKSHLQMYRNLKGHTILSSMHQEMEGNEDYKDLPMCSNCSSQRSQEAKFRATKYDMGIVTQEIRPSENKGLSQTSETDYDLNQEPESCAYIHSDTSNEENSRRMKFLDFTFSFSSALIPTMHGNQERMHFSSPNAADNHAVDSNSVQPHGSNNYINLDLAI 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00539 222 FunFam Two-component response regulator 13 76 - -
Viun6g00539 222 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 74 IPR017930 -
Viun6g00539 222 MobiDBLite consensus disorder prediction 188 210 - -
Viun6g00539 222 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 3 119 IPR046955 GO:0003700
Viun6g00539 222 NCBIfam myb-like DNA-binding domain, SHAQKYF class 17 71 IPR006447 GO:0003677
Viun6g00539 222 SUPERFAMILY Homeodomain-like 16 71 IPR009057 -
Viun6g00539 222 Gene3D - 17 73 - -
Viun6g00539 222 Pfam Myb-like DNA-binding domain 20 70 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00539 Viun-Chr6 14224710 14229807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00539 8 70 G2-like Transcription Factor Family AT1G14600 68.254 2.06e-24 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Viun6g00539 Myb_DNA-binding 2.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00539 - - vun:114187568 456.062