Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00520 ATGAACAACAGTGTTCCTGATTGGAATTTTGGGAGTGATTCCTGCATCACCACCAATCAGAAGAAACCTATGGGGGTGGACCAAGAACTTGTGGAGCTTCTGTGGCAAAATGGCCAGGTAGTGTTGCACAGCCAAACTCATAGAAAACCAGTTGTGAATTCCATCACACAAAGACCCCTTCAGAGGGCTTTTCAATCAACATTAAGGGCTAGTGAGCCATTTGGGAACTCAAGTAACTTGATTCAAGATGATGAGACAGTTTCGTGGATCCAATACCCTCTTGAGGATCCATTGGAACAAGAGTTCTGTTCAAACCTTTTATCTGAACTGCCACAGTGTGATGTTGAGTCCTATAAGCAAATCAAGCCATTTGAAGAGGCAAAGTTTACCAAATTGGATGCTTCTGGTGCCCCCCATGTGCTTGTAAGTTCACAATCACCTACTGTGAAATCCTCCTCTTTTCAGGAATTCTCAGGAATTCCTATACCTGCTCCAAGATTCCATGTTTCTGATTCACCTCAGAAAAATAACAATGATTTGGGTGGTGGACCATGTAAGGTCCAAAACTTCACTCACTTTTCACCTACCCTTAATGTTTCTTCAGCATTGCCTAATGCGCATTTTAGAGACAAAATCACTGGTAACACGTCAAAAAATGAGGTTAGAGAGTGCTCATTGATGACAGTTGGATCAAGTTACTGTGGTAGCAATCACATGACCCAAGATCCAGATGCAAGCAGGGCATCAAGCAATGGTGTTTGGACTACTACTTTATCTGTTGACCCTGAAGCTGTCAGAGATCATGTGCCAAGAACAATTCCTCTGAGTGAGAAAGGGAAATCAGAGATGCTTGAACCAACTGCTACTTCTTCTTCTGGTGGCTCAGGTAGTAGTCTTGGAAAAACTTGTTCCTTATCCACCAGAAACCAGAGCCAAAAAAGAAAAACAATAGACGTGGAAGAATCTGAGGATCATAGTGAGGACACAGAACTTAAATCACCAGTTGGAAACAAGACATCCCAACGGACAGGGTCGGCTAGAAGGAACCGTGCTGCTGAAGTGCATAATCTATCAGAAAGGAGAAGGAGAGATAGGATCAATGAGAAGATGAAAGCATTGCAACAACTCATACCTCACAGTAGCAAGACAGACAAAGCATCAATGTTGGAAGAGGCAATAGAATATTTGAAATCACTTCAGTTACAACTTCAGCTAATGTGGATGGGATCTGGCATGGCACCAATGATGTTTCCAGGAATCCAGCACTACATGTCTCAAATGGGTATGGGAATGGCTACATCTCCTTTCCCTCCCATTCAAAATCCAATGCAATTACCAAGAGTACCTCTTGATCATCCTGTATCTGCATCTCAGACACCAAACCAGACATTGATGTGTCAAAATCCTATTCTGGGTGCCTTCAATTACCAAAATCAGATGCAAAATCCAGCTCTTTCAGAGCAATATGCACGTTACATGGGGTATCATCTTATGCAAAATGCTTCTCAGCCAATGAATGTATTCAGATATGGTCCCCAGGGAGTACAACATAGTCAAACAATGATTACACCCAGCAACAGCAGTGGAAACATGAGTGGAGCAGCAAACATTGATGAGGCTGTGAGTGGCAAAATGGGTTCTTCCACCTTTAACTAA 1656 0.4263 MNNSVPDWNFGSDSCITTNQKKPMGVDQELVELLWQNGQVVLHSQTHRKPVVNSITQRPLQRAFQSTLRASEPFGNSSNLIQDDETVSWIQYPLEDPLEQEFCSNLLSELPQCDVESYKQIKPFEEAKFTKLDASGAPHVLVSSQSPTVKSSSFQEFSGIPIPAPRFHVSDSPQKNNNDLGGGPCKVQNFTHFSPTLNVSSALPNAHFRDKITGNTSKNEVRECSLMTVGSSYCGSNHMTQDPDASRASSNGVWTTTLSVDPEAVRDHVPRTIPLSEKGKSEMLEPTATSSSGGSGSSLGKTCSLSTRNQSQKRKTIDVEESEDHSEDTELKSPVGNKTSQRTGSARRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSSKTDKASMLEEAIEYLKSLQLQLQLMWMGSGMAPMMFPGIQHYMSQMGMGMATSPFPPIQNPMQLPRVPLDHPVSASQTPNQTLMCQNPILGAFNYQNQMQNPALSEQYARYMGYHLMQNASQPMNVFRYGPQGVQHSQTMITPSNSSGNMSGAANIDEAVSGKMGSSTFN 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00520 551 MobiDBLite consensus disorder prediction 283 312 - -
Viun6g00520 551 SMART finulus 356 405 IPR011598 GO:0046983
Viun6g00520 551 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 353 428 IPR036638 GO:0046983
Viun6g00520 551 Pfam Helix-loop-helix DNA-binding domain 354 400 IPR011598 GO:0046983
Viun6g00520 551 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 350 399 IPR011598 GO:0046983
Viun6g00520 551 MobiDBLite consensus disorder prediction 313 332 - -
Viun6g00520 551 MobiDBLite consensus disorder prediction 333 347 - -
Viun6g00520 551 FunFam Basic helix-loop-helix transcription factor 345 408 - -
Viun6g00520 551 CDD bHLH_AtPIF_like 350 413 IPR047265 -
Viun6g00520 551 PANTHER TRANSCRIPTION FACTOR PIF3 18 509 IPR044273 GO:0003700|GO:0006355
Viun6g00520 551 Gene3D - 345 406 IPR036638 GO:0046983
Viun6g00520 551 Coils Coil 356 376 - -
Viun6g00520 551 MobiDBLite consensus disorder prediction 265 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00520 Viun-Chr6 13602961 13608355 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00520 1 99 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G59060 39.815 8.52e-13 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun6g00520 HLH 1.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00520 K16189 - gmx:100784531 946.421