Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00509 ATGACGAGCTTGATCCTCAGAAGATCCTCCTCCGTAATCTCGCGCCGTTTCTTCGCCACTCTCGCCACCGTCGAACCGCTTTCGCGCCAAAGCGGGCTCGCCGCCCTCCGGCACGGTGGCTCCAACGACGGAGTTGGAATCAGGTTCTTGCACGCGATATCAGGACCATTGAACTTCCGCTCGTCGCCGGTTTCTTGCGCAGCGCAGCTCGCAGTGGAGCGCGACTACTCCAACGAAGATGTAGGTTCTGGCACGAACTGCGACGAAGGACTCGAGATCGCGAAGCTCGGGATCTCGACGGAGATCGTGGAGGCCTTAGCCAAGAAAGGGATCGCAAAGCTGTTTCCTATTCAGAGAGCTGTGCTGGAACCTGCAATGCAGGGACGTGATATGATTGGTCGAGCTAGGACAGGAACTGGGAAAACTCTTGCATTTGGGATACCCATCTTAGACAGGATTATTCAGCTAAATGCTAAGCATGGGCGAGGAAAAGATCCTTTGGCTATGGTTTTGGCTCCGACTAGAGAACTTGCACGGCAGGTTGAGAAGGAATTCAATGAAGCTGCACCTAAACTGGACACGATCTGTCTTTATGGGGGTATGCCTATCCAACAACAAATGAGGCAGCTTAATTATGGTGTAGATATTGTAGTAGGCACACCTGGTAGAATTATTGATCTTCTCAATAGGAGGGCACTGAATTTGAAGGATGTGAAGTTTGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTCGGATTTCAAGAAGCTGTGGAGAACATCTTGCAAAATTTGTCTCCAAATCGTCAGACTCTTATGTTCTCAGCAACTATGCCATCTTGGATAAAGAGTATCACCCGAAATTACCTAAACAATCCCCTTACCATTGACCTCGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCACTGTACTCTATTGCATCTGATATGCGCACTAAAGCAGGGATTCTTGCACCCCTGATAACAGAACATGCAAATGGAGGAAAGTGTATTGTTTTCACTCAAACCAAACGTGATGCTGATAGATTATCATATGTAATGGCTAAAAGCCTTAAATGTGAGCCTTTGCATGGAGATATTTCACAAACTCAGAGGGAAAGGACTCTTGCTGGTTTCAGAAACAACCATTTCAATGTTTTAGTGGCAACTGACGTTGCATCACGTGGCCTTGATATTCCAAATGTGGATCTCGTGATACATTATGATCTTCCCAGTTCATCAGAGATATTTGTTCACAGATCTGGAAGAACAGGCCGTGCTGGGAAGAAAGGAGCTGCTATTCTTATTTACTCAGAAGATCAATTCAGGACTTTGAGGACTATTGAGCGTGATGTTGGATGCAAATTTACTGAGCTAGCAAAGATTAATGCTCAGAGTGGATCAGCAGACATGTTTGGTGGATGGAGTGGTGGTCGATTTGGTTCTTCAGGAGGTATGAGGGATCGCCAGTCTGGAGGTACAGGTTTTGGTCGTAGTCCTGGATATGGCCGATCTAGCTATGGAAATTCCAGTTCTGGCAGTTACAGTAACTCCGGGTTTGGCCGATCTAGCCATGGAAATTCCAGCGAGACAGGAAGGTTTGGAGGACCAAGCTCTAGCCGTTTTGGCAGCCCTGGTTCAAGTCTGTCAGGAGGAGGTTTCGGTGGATTTGGTAGCTCCGATAGATCTGGTGGATTTGGTAGTTCAGATCGATCTGGTGGTTTTGGTTGGGCTCAATCTGGTGGTTTTGGTGATAGAAAGTGA 1770 0.4706 MTSLILRRSSSVISRRFFATLATVEPLSRQSGLAALRHGGSNDGVGIRFLHAISGPLNFRSSPVSCAAQLAVERDYSNEDVGSGTNCDEGLEIAKLGISTEIVEALAKKGIAKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDRIIQLNAKHGRGKDPLAMVLAPTRELARQVEKEFNEAAPKLDTICLYGGMPIQQQMRQLNYGVDIVVGTPGRIIDLLNRRALNLKDVKFVVLDEADQMLQVGFQEAVENILQNLSPNRQTLMFSATMPSWIKSITRNYLNNPLTIDLVGDSDQKLADGISLYSIASDMRTKAGILAPLITEHANGGKCIVFTQTKRDADRLSYVMAKSLKCEPLHGDISQTQRERTLAGFRNNHFNVLVATDVASRGLDIPNVDLVIHYDLPSSSEIFVHRSGRTGRAGKKGAAILIYSEDQFRTLRTIERDVGCKFTELAKINAQSGSADMFGGWSGGRFGSSGGMRDRQSGGTGFGRSPGYGRSSYGNSSSGSYSNSGFGRSSHGNSSETGRFGGPSSSRFGSPGSSLSGGGFGGFGSSDRSGGFGSSDRSGGFGWAQSGGFGDRK 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00509 589 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 451 IPR027417 -
Viun6g00509 589 Gene3D - 315 473 IPR027417 -
Viun6g00509 589 MobiDBLite consensus disorder prediction 505 549 - -
Viun6g00509 589 Pfam DEAD/DEAH box helicase 115 283 IPR011545 GO:0003676|GO:0005524
Viun6g00509 589 MobiDBLite consensus disorder prediction 482 589 - -
Viun6g00509 589 SMART helicmild6 350 430 IPR001650 -
Viun6g00509 589 Pfam Helicase conserved C-terminal domain 325 430 IPR001650 -
Viun6g00509 589 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 92 460 - -
Viun6g00509 589 SMART ultradead3 110 313 IPR014001 -
Viun6g00509 589 FunFam ATP-dependent RNA helicase RhlE 79 299 - -
Viun6g00509 589 CDD SF2_C_DEAD 322 439 - -
Viun6g00509 589 Gene3D - 92 300 IPR027417 -
Viun6g00509 589 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 325 470 IPR001650 -
Viun6g00509 589 CDD DEADc 102 297 - -
Viun6g00509 589 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 122 296 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00509 Viun-Chr6 13391807 13399352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00509 96 461 Eukaryotic Initiation Factors Gene Family AT3G19760 32.703 4.44e-65 217