Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00505 ATGGCAGCGGGAACAAGAGCTGAAGTAAGAGAGAGAGAGAGAGAGAGAGATGGGTTGGTGAAGGTTTTCAAGAAGATGGAACGAAGTGGTGGGATGGTAACAGGGTCGCATGAAAGGAATGAACTTGTTAGAGTTAGACATGGTTCCGATAGTGGGTCTAAACCCTTGAAGAATTTAAATGGTAAGATTTGTCAAATATGTGGTGATACCATTGGATTAACGGCTACTGGTGATGTCTTTGTTGCTTGTCACGAGTGTGGCTTCCCACTTTGTCATTCTTGTTACGAGTATGAGCTGAAAAATGTGAGCCAATCTTGTCCCCAGTGCAAGACTAGATTCACAAGTCAGCAAGAGGGCGCTGGAGTGGAAGGTGATGATGATGATGAAGAAGATGCTGATGATCTAGATAATGAGATCAACTATGGCCAAGAAAACAATTCCAAGGCAGGGATGCAATGGGAAGAAGATGCTGACTTCTCTTCATCTTCTGGACATGATTCTCAAATACCAAATCCCCATCTACCAAACGGGCAACCGATGTCTGGTGATATTCCATGTGCTACTTCTGAGGCTCAATCTATGCAAACTACATCAGGTCCTATGGCTACAACAAAGCAACCGGGTCCTGAAAGTGACGAAGAGATAAGGAGAGTGCCGGAGATTGGAGGTGAAAGTGCTGGAACTGCAGCTTCTCGGCCGGATGGTGGTTCAAATGCCGGTGCAGAACGTGCTCAGGGGACCGGAGAGGGTCAGAAGAAGAGAGGGAGAAGTCCAGCTGATAAAGAAAGCAAGCGGCTTAAGAGGCTATTGAGGAACAGAGTTTCGGCTCAACAAGCAAGGGAGAGGAAGAAGGCTTACTTGATTGATTTGGAAACAAGAGTCAAAGACTTGGAGAAGAAGAATTCAGAGCTCAAGGAAAGACTTTCTACTTTGCAGAATGAGAACCAAATGCTTAGACAAATATTGAAGAATACAACAGCAAGCAGAAGAGGGAGCAATAGTGGTACCAATAATGCTGAATGA 1023 0.4506 MAAGTRAEVRERERERDGLVKVFKKMERSGGMVTGSHERNELVRVRHGSDSGSKPLKNLNGKICQICGDTIGLTATGDVFVACHECGFPLCHSCYEYELKNVSQSCPQCKTRFTSQQEGAGVEGDDDDEEDADDLDNEINYGQENNSKAGMQWEEDADFSSSSGHDSQIPNPHLPNGQPMSGDIPCATSEAQSMQTTSGPMATTKQPGPESDEEIRRVPEIGGESAGTAASRPDGGSNAGAERAQGTGEGQKKRGRSPADKESKRLKRLLRNRVSAQQARERKKAYLIDLETRVKDLEKKNSELKERLSTLQNENQMLRQILKNTTASRRGSNSGTNNAE 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00505 340 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 191 337 IPR044280 GO:0000981|GO:0045944
Viun6g00505 340 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 267 282 IPR004827 GO:0003700|GO:0006355
Viun6g00505 340 FunFam Transcription factor HY5 283 324 - -
Viun6g00505 340 Gene3D Single helix bin 283 324 - -
Viun6g00505 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 138 IPR013083 -
Viun6g00505 340 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 262 325 IPR004827 GO:0003700|GO:0006355
Viun6g00505 340 SUPERFAMILY RING/U-box 48 133 - -
Viun6g00505 340 Coils Coil 259 328 - -
Viun6g00505 340 FunFam Cellulose synthase A catalytic subunit 1 [UDP-forming] 47 138 - -
Viun6g00505 340 CDD bZIP_HY5-like 265 316 - -
Viun6g00505 340 MobiDBLite consensus disorder prediction 247 282 - -
Viun6g00505 340 Pfam Zinc-binding RING-finger 54 130 IPR027934 -
Viun6g00505 340 CDD mRING-HC-C4C4_CesA 62 112 - -
Viun6g00505 340 MobiDBLite consensus disorder prediction 121 138 - -
Viun6g00505 340 Pfam bZIP transcription factor 261 322 IPR004827 GO:0003700|GO:0006355
Viun6g00505 340 ProSiteProfiles Zinc finger RING-type profile. 64 110 IPR001841 -
Viun6g00505 340 SMART brlzneu 260 324 IPR004827 GO:0003700|GO:0006355
Viun6g00505 340 MobiDBLite consensus disorder prediction 139 175 - -
Viun6g00505 340 SUPERFAMILY Leucine zipper domain 264 322 IPR046347 GO:0003700|GO:0006355
Viun6g00505 340 MobiDBLite consensus disorder prediction 182 205 - -
Viun6g00505 340 MobiDBLite consensus disorder prediction 114 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00505 Viun-Chr6 13353187 13357103 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00505 32 209 Glycosyltransferase AT2G25540 51.685 1.93e-51 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Viun6g00505 zf-UDP 5.8e-36 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00505 K10999 - gmx:548004 559.681