Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00487 ATGTCACGGACTGATACGATGACGACGACTTCGGATCTTAATAGAACTGGTCCCGTGGAAAGAGACATTGAACAGGCTATTACTGCTTTAAAAAAGGGGGCTTACTTGCTCAAGTATGGAAGAAGAGGGAAGCCCAAGTTTTGTCCTTTTCGACTTTCCAATGATGAATCTCTTTTGATATGGTTCTCAGGGAAGGAAGAGAAGCGCCTTAAACTAACTAATGTTTCTAGGATTATATCTGGACAACGCACACCAATCTTTCAAAGATATCCACGGCCTGAGAAGGAATACCAGTCGTTTTCTCTCATTTACAATGATAGATCGCTAGACTTGATTTGTAAGGATAAAGATGAAGCTGAGGTTTGGTTCAGTGGATTGAAAGCATTAATTTCACGCAGTCATCACCGGAAGTGGAAACCTGAGTCAAGAAGTGATGGTATTCCATCTGAAACTAATAGTCCTCGAACATACACTAGAAGAAGTTCTCCCTTGAATTCTCCATTTGGTAGTAATGAAAGCTTGCCAAAGGACAGTGGGGATCATCTTCGCCTTCATAGCCCATATGAAAGCCCCCCAAAGAATGGTTTGGATAAGGCATTTTCTGATGTGATTTATTATCCTATTCCTCCAATGGGTTTCTTCCCTCCAGATTCTGTGAGTGGTTCACTCCACTCCGTGTCATCAGGAGGATCAGATAGCATGCATGGTCAAATGAAGACAATGCCTATGGATGCGTTTAGAGTTAGTCTATCAAGTGCAGTTAGCTCATCTAGCCAAGGTTCTGGTCATGATGACGGCGATGCCTTGGGGGATGTTTTCATTTGGGGGGAAGGCACAGGTGATGCTGTACTAGGTGGTGGGTCTCACCAAGTTGGGAGTGATTTTGGTGCGAAAACAGATTCTTTGTTGCCCAAAGCGTTGGAATCCGCTGTAGTTCTTGATGTACAGAATATTGCCTGTGGTGGGAGACATGCGGCCTTAGTTACCAAACAAGGTGAAATTTTTTCCTGGGGGGAAGAATCAGGAGGAAGGCTTGGGCATGGAGTTGATTCGGATGTTCCCCATCCAAAGCTTATTGAATCTCTAAGTAATACAAATATTGAACTTGTAGCTTGTGGGGAGTATCATACATGTGCTGTGACACTCTCTGGTGATCTTTATACATGGGGTGATGGCACTTACAATTATGGTCTTCTAGGGCATGGAAATCAGGTGAGCCACTGGGTCCCAAAAAGGGTAAATGGCCCTTTGGAGGGAATACATGTTTCATCTATTTCTTGTGGTCCATGGCACACTGCTGTTGTAACCTCTGCTGGGCAATTATTTACTTTTGGTGATGGGACATTTGGTGTTCTGGGTCATGGAGACAGAAAAAGTGTTTCCTTGCCTAGAGAAATAGAGTCCTTGAAGGGTCTTCGTACTGTTCAGGCTGCCTGTGGTGTTTGGCATACTGCTGCTGTTGTGGAGGTCATGGTTGGAAATTCAAGTTCCAGCAACTGCTCTTCAGGGAAGCTGTTTACATGGGGTGATGGAGACAAAGGTCGACTTGGGCATGGTGACAAGGAATCAAAACTTGTTCCAACCTGTGTTGTGGCTCTTGTTGAACCTAATTTTTGTCAAGTGTCATGTGGTCATAGTATGACTGTTGTACTTTCTCGATCAGGCCATGTCTATACAATGGGCAGTTGTGTCTATGGCCAGTTAGGAAATACTCAAGCGGATGGGAAGCTACCAACCCGTGTAGAAGGAAAGCTGTCAAAGAGTTTTGTGGAAGAGATAGCTTGTGGTGCATATCATGTAGCAGTTCTAACTTCAAGGACTGAGGTTTTCACGTGGGGGAAAGGTGCTAATGGTCGTTTAGGCCATGGGGATACTAACGACAGAAGCACCCCAACACTAGTAGAAGCTCTGAAAGACAAGCAAGTAAAAAGTATTGCTTGTGGTACAAATTTCACCGCAGCCATATGCCTGCATAAGTGGGTATGTGGTGTTGACCAGTCTATGTGTTCGGGCTGCCGCCTGCCATTCAATTTCAAAAGAAAACGCCACAATTGTTATAACTGTGGACTTGTTTTTTGTCATTCATGCAGTAGTAAGAAATCTGTCAAAGCTTCAATGGCACCAAACCCCAACAAACCTTATCGTGTCTGTGATAATTGTTTTAATAAAATAAGGAAAACAACCGAAACTGATTCTTCATCTCAGTCCTCTATGAGCAGAAGAGGAAGTGTTAATCAGGGGTCACTTGAGTTTATTGGTAAGGATGACAAATTGGATTCCAGATCTCATAATCAACTTGCCAGGTTTTCTTCAATAGAATCCTTGAAACAAGTGGACAGCAGATCTTCGAAGAAAAACAAAAAATTGGAATTTAACAGTAGCCGAGTCTCACCTGCTCCAAATGGTGGTTCACAGTGGGGAGCAATGAATATTTCAAAATCTTTTAATCCTGTTTTTGGATCATCGAAGAAGTTTTTTTCAGCTTCTGTTCCTGGATCTAGGATTGTTTCCCGGGCAACATCGCCAATATCTAGGCGACCTAGTCCACCTCGTTCAACTACTCCAACCCCAACAGTAGGGGGACTTTCATCCCCAAAGATAGTTGTGGATGATGCTAAGAGAACCAATGATAACCTCAGTCAGGAGGTTATTAAATTAAGATCGCAGGTGGAAAACCTGACTCGAAAAGCCCAGCTTCAAGAAGTGGAGTTGGAAAGAACAACTAAACAGTTAAAAGAAGCAATAGCAATTGCAAGTGAAGAAACTGCCAAATGCAAAGCAGCAAAGGAAGTGATCAAGTCACTTACTGCCCAGTTGAAGGATATGGCCGAGAGGTTGCCTGTAGGAGTGTCTAGGACTGTCAGATCACCACCCTCTCTTGCTTCCTTTGGCTCCATTCCTGGTTCCAATGACCTTAACAATGCTTCCTTTGATCGATTGAATATTCAAGCAACAAGCCCAGAATCAGACTCAACTGGATCCAATAACCAGTTACTTTCAAATGGATCAAGCACCATCATCAACAGGACTGCAGGTCACATTAAACACAGTCAGTCAGATGCTACTAGCACAGGTCACAACAAACATGGTCAATTAGATGCAAGTAGTAGAAATGGGAGCAAAACAAAGGATAATGAGACTGAATGGGTTAAGCAAGATGAACCTGGTGTATATATTACTCTCACCTCCCTACCAGGAGGTGTAATAGATCTTAAAAGAGTTCGCTTCAGTCGGAAACGGTTTAGTGAGAAACAAGCAGAACAATGGTGGGCGGAGAATCGTGGAAGAGTATATGAGCAGTACAACGTGCGCACGATTGACAAATCGACAATAGGTGTTGGGAGTGAGGACCTGCCTCATTCATGA 3366 0.4346 MSRTDTMTTTSDLNRTGPVERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESLLIWFSGKEEKRLKLTNVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWKPESRSDGIPSETNSPRTYTRRSSPLNSPFGSNESLPKDSGDHLRLHSPYESPPKNGLDKAFSDVIYYPIPPMGFFPPDSVSGSLHSVSSGGSDSMHGQMKTMPMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDAVLGGGSHQVGSDFGAKTDSLLPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVDSDVPHPKLIESLSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSLPREIESLKGLRTVQAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKESKLVPTCVVALVEPNFCQVSCGHSMTVVLSRSGHVYTMGSCVYGQLGNTQADGKLPTRVEGKLSKSFVEEIACGAYHVAVLTSRTEVFTWGKGANGRLGHGDTNDRSTPTLVEALKDKQVKSIACGTNFTAAICLHKWVCGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSVKASMAPNPNKPYRVCDNCFNKIRKTTETDSSSQSSMSRRGSVNQGSLEFIGKDDKLDSRSHNQLARFSSIESLKQVDSRSSKKNKKLEFNSSRVSPAPNGGSQWGAMNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTVGGLSSPKIVVDDAKRTNDNLSQEVIKLRSQVENLTRKAQLQEVELERTTKQLKEAIAIASEETAKCKAAKEVIKSLTAQLKDMAERLPVGVSRTVRSPPSLASFGSIPGSNDLNNASFDRLNIQATSPESDSTGSNNQLLSNGSSTIINRTAGHIKHSQSDATSTGHNKHGQLDASSRNGSKTKDNETEWVKQDEPGVYITLTSLPGGVIDLKRVRFSRKRFSEKQAEQWWAENRGRVYEQYNVRTIDKSTIGVGSEDLPHS 1121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00487 1121 SMART PH_update 30 133 IPR001849 -
Viun6g00487 1121 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 66 933 - -
Viun6g00487 1121 MobiDBLite consensus disorder prediction 145 173 - -
Viun6g00487 1121 FunFam PH, RCC1 and FYVE domains-containing protein 1 493 664 - -
Viun6g00487 1121 Gene3D - 496 670 IPR009091 -
Viun6g00487 1121 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 671 732 IPR013083 -
Viun6g00487 1121 SUPERFAMILY FYVE/PHD zinc finger 660 730 IPR011011 -
Viun6g00487 1121 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 332 383 IPR000408 -
Viun6g00487 1121 SUPERFAMILY PH domain-like 22 130 - -
Viun6g00487 1121 ProSiteProfiles BRX domain profile. 1047 1102 IPR013591 -
Viun6g00487 1121 Pfam Unstructured region between BRX_N and BRX domain 962 1023 - -
Viun6g00487 1121 MobiDBLite consensus disorder prediction 1015 1038 - -
Viun6g00487 1121 Pfam Pleckstrin homology domain 24 130 IPR001849 -
Viun6g00487 1121 Gene3D - 22 139 IPR011993 -
Viun6g00487 1121 MobiDBLite consensus disorder prediction 1015 1048 - -
Viun6g00487 1121 SMART fyve_4 657 726 IPR000306 GO:0046872
Viun6g00487 1121 MobiDBLite consensus disorder prediction 137 193 - -
Viun6g00487 1121 Gene3D - 395 495 IPR009091 -
Viun6g00487 1121 Gene3D - 220 394 IPR009091 -
Viun6g00487 1121 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 477 487 IPR000408 -
Viun6g00487 1121 MobiDBLite consensus disorder prediction 792 808 - -
Viun6g00487 1121 Coils Coil 869 945 - -
Viun6g00487 1121 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 384 438 IPR000408 -
Viun6g00487 1121 PRINTS Chromosome condensation regulator RCC1 signature 425 441 IPR000408 -
Viun6g00487 1121 PRINTS Chromosome condensation regulator RCC1 signature 602 623 IPR000408 -
Viun6g00487 1121 PRINTS Chromosome condensation regulator RCC1 signature 544 562 IPR000408 -
Viun6g00487 1121 PRINTS Chromosome condensation regulator RCC1 signature 441 455 IPR000408 -
Viun6g00487 1121 PRINTS Chromosome condensation regulator RCC1 signature 315 328 IPR000408 -
Viun6g00487 1121 PRINTS Chromosome condensation regulator RCC1 signature 334 350 IPR000408 -
Viun6g00487 1121 PRINTS Chromosome condensation regulator RCC1 signature 384 400 IPR000408 -
Viun6g00487 1121 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 439 490 IPR000408 -
Viun6g00487 1121 SUPERFAMILY RCC1/BLIP-II 270 660 IPR009091 -
Viun6g00487 1121 MobiDBLite consensus disorder prediction 774 808 - -
Viun6g00487 1121 CDD FYVE_like_SF 668 721 - -
Viun6g00487 1121 FunFam PH, RCC1 and FYVE domains-containing protein 1 241 492 - -
Viun6g00487 1121 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 270 331 IPR000408 -
Viun6g00487 1121 Pfam Regulator of chromosome condensation (RCC1) repeat 608 655 IPR000408 -
Viun6g00487 1121 Pfam Regulator of chromosome condensation (RCC1) repeat 554 603 IPR000408 -
Viun6g00487 1121 Pfam Regulator of chromosome condensation (RCC1) repeat 502 551 IPR000408 -
Viun6g00487 1121 Pfam Regulator of chromosome condensation (RCC1) repeat 383 435 IPR000408 -
Viun6g00487 1121 Pfam Regulator of chromosome condensation (RCC1) repeat 332 380 IPR000408 -
Viun6g00487 1121 Pfam Regulator of chromosome condensation (RCC1) repeat 439 487 IPR000408 -
Viun6g00487 1121 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 318 328 IPR000408 -
Viun6g00487 1121 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 663 725 IPR017455 -
Viun6g00487 1121 MobiDBLite consensus disorder prediction 837 867 - -
Viun6g00487 1121 CDD PH_PLC_plant-like 21 131 - -
Viun6g00487 1121 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 425 435 IPR000408 -
Viun6g00487 1121 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 607 658 IPR000408 -
Viun6g00487 1121 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 503 554 IPR000408 -
Viun6g00487 1121 FunFam Putative E3 ubiquitin-protein ligase HERC1 665 733 - -
Viun6g00487 1121 Pfam FYVE zinc finger 659 725 IPR000306 GO:0046872
Viun6g00487 1121 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 555 606 IPR000408 -
Viun6g00487 1121 Pfam Transcription factor BRX N-terminal domain 920 953 IPR027988 -
Viun6g00487 1121 Pfam Transcription factor regulating root and shoot growth via Pin3 1046 1101 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00487 Viun-Chr6 12734118 12746675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00487 929 1111 Major Intrinsic Protein MIP AT1G31880 34.021 8.75e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00487 - - var:108342748 2113.19