Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00486 ATGGAAGAAACAACTGAGATGCAATCAGAAGAAAATAAATTGTCAATGGAGAAAAATAAGAAAAGAAGGCTCAAAACACCTGCGCAGCTTACAGCATTGGAAAATTTTTATAATGATCACAAATATCTCACGGAGGAAATGAAATCAGAACTTGCTGAAGAGTTAGAGTTGACAGAAAAGCAAATATCTGGATGGTTTTGCCACAGAAGATTGAAAGATAAAAAGTTGATGAATGATGAAGTAGGTGCTAATGGACGACAAGATCGTTCAAGTGGTGTTATCCAGGACAGAGGCAGTGGTCTAGTGCAGGATTCGTGCGGAAGCACTAAACATGGTGATTATAGATATCTGGATCCCAAAGAGGTTGAGAGTCATGGACTCTATAACCATGAATTTTCGGCTGCAGATATGACCTATGCTCAAAGGAACAACCATCATTATGCAGAAAATGATAGTGCAACTGATAACACATCATCTGAGAGTTGCTCATCTTTGCAAGACCGATTGCTTCCTCAAGGACAGGATCAGTATGACATGGAGCCTTCTAGTCATTTGATGCCTAACGGGTCTCTTCCGCCGTTAAATCCCAAGGGTGCAAATAACATGGGGTATAAACCATCAGGGTATTTAAAAGTGAAGGGAGAGATAGAACATGTTGCTATTACTGCTGTCAAAAAGCAATTAGGAAATCATTTTCAGGAAGATGGACCATTACTTAGTGTTGAGTTTGATACAATTCCTCCAGGGGCATTTGAAGGCCAAATTGCAGATCTAGCTAATGAAGGATACTATGCTGCAAATCCCGCTCTTCCAAATTCACCAGAAGTCTCTGCTGCGAAAAAGCAATCCAGTGGCTCAAGATATGATTCATATTTTACCAAATTAAGGTCCCAAGATTCACATAAGGAAGGAAGTGACTTTGGCTCTTTGCATGGTCCTGATTTGCAGGATAAGAAACCCCACAAGCATATAAATCAAAGAGCAAGTTTTCACAGTTTTACCAATCATTTGCCTCACAAGAACTCTTCCCTGGATTTGTATGTAGACTCTACTGGGGAAGCATCTGCTTATAATGGTGCTAAAAACCATAGGATGGGTACTAAGCATGGTTTTGAGGGGATGAGGTCAGATTCTGCTTCCAACCCCAGTGACCACTATGAAGAAAATGCCGTTGCAGTTAAGCAGATAGATTCGCTGTTACATCTCTACAACAACATCAATCTGAAGAATGTACAAAAGAGTGAATATGTAAAATCTAAGCCTTCAAATTTAGTACACAAGTCTCAAATTTACTTGAATGCTGAAGAAAAAGGGCTTACCAAAAGGATGGCCAAGGAAGAGAAGTTTAATGGCGATAGAAAGTTAAAAAAACAATATCATGATCCAGATGGAATTAAGGTGCTTTCAAATGAAAAAATGGTTGCAAAGCGAGCTAAAGTTGACCCATTTCAACAATATGATGTTAAACAAACACCTGTTTCTGACCTGGAACCAAGAAAAGTTCAAAGGTCTGCAGCAGAGATGCCATCTAGCTTTAGTGAGGATGAAACTGCTGAAACCAGTTCCTCGGTGGATTAA 1578 0.3954 MEETTEMQSEENKLSMEKNKKRRLKTPAQLTALENFYNDHKYLTEEMKSELAEELELTEKQISGWFCHRRLKDKKLMNDEVGANGRQDRSSGVIQDRGSGLVQDSCGSTKHGDYRYLDPKEVESHGLYNHEFSAADMTYAQRNNHHYAENDSATDNTSSESCSSLQDRLLPQGQDQYDMEPSSHLMPNGSLPPLNPKGANNMGYKPSGYLKVKGEIEHVAITAVKKQLGNHFQEDGPLLSVEFDTIPPGAFEGQIADLANEGYYAANPALPNSPEVSAAKKQSSGSRYDSYFTKLRSQDSHKEGSDFGSLHGPDLQDKKPHKHINQRASFHSFTNHLPHKNSSLDLYVDSTGEASAYNGAKNHRMGTKHGFEGMRSDSASNPSDHYEENAVAVKQIDSLLHLYNNINLKNVQKSEYVKSKPSNLVHKSQIYLNAEEKGLTKRMAKEEKFNGDRKLKKQYHDPDGIKVLSNEKMVAKRAKVDPFQQYDVKQTPVSDLEPRKVQRSAAEMPSSFSEDETAETSSSVD 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00486 525 MobiDBLite consensus disorder prediction 297 322 - -
Viun6g00486 525 MobiDBLite consensus disorder prediction 7 24 - -
Viun6g00486 525 SUPERFAMILY Homeodomain-like 18 82 IPR009057 -
Viun6g00486 525 MobiDBLite consensus disorder prediction 506 525 - -
Viun6g00486 525 Pfam Homeodomain 20 75 IPR001356 GO:0003677
Viun6g00486 525 MobiDBLite consensus disorder prediction 84 106 - -
Viun6g00486 525 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 525 - -
Viun6g00486 525 MobiDBLite consensus disorder prediction 81 110 - -
Viun6g00486 525 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Viun6g00486 525 SMART HOX_1 18 80 IPR001356 GO:0003677
Viun6g00486 525 MobiDBLite consensus disorder prediction 1 25 - -
Viun6g00486 525 MobiDBLite consensus disorder prediction 486 525 - -
Viun6g00486 525 CDD homeodomain 20 75 IPR001356 GO:0003677
Viun6g00486 525 Gene3D - 12 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00486 Viun-Chr6 12709510 12715083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00486 3 525 Homeobox Transcription Factor Family AT4G03250 39.591 1.44e-80 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Viun6g00486 Homeodomain 3.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00486 - - gmx:100812697 848.195