Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00485 ATGGCAAGAAAGAACGAGGGATGCGCTGTGGGAATAGACCTCGGAACAACGTACTCGTGTGTTGCAGTATGGCAGGAGCAGCAGGGTCGAGTGGAGATTATCCACAATGACCAAGGCAATAACATCACTCCTTCTTTTGTTGCTTTCAATGACAAACAAAGATTGATAGGTGATGCTGCTAAAAACCAGGCTGCCACCAATCCAGAGAACACTGTGTTTGATGCTAAGAGATTAATTGGTCGTAAGTATAGTGATCCCATTGTTCAGAAAGATAAAAGGTTGTGGCCATTCAAGGTCATTCCTGGTGATGGTGACAAACCCATGATTGTAGTTAACTATAAGGGTCAGCAAAAGTACCTTTCCGCCGAGGAAATATCATCTATGGTTCTCTCAAAGATGAGGGAGATTGCAGAGACTTTTCAGGGAAAACCTGTAAGAAATGCGGTGGTTACTGTGCCTGCTCATTTCAATGACTCTCAGCGTAAAGCTACCGTAGATGCAGGAACCATTGCTGGCCTCAATGTTATGCGGATAATCAATGAACCCACAGCTGCAGCTATTGCATATGGTTTTGACAAAGGAATCAGAAGTGTTGGAGAGCGAAATCTTTTAGTATTTGACCTTGGTGGTGGTACCTTTGACGTGTCTATCCTCACAGTTAAGGATAAGGTATTCCAAGTTAAGGTTACTGCAGGAAACACTCACCTTGGAGGAGAGGACATTGATAACAGAATGGTGGAGTATTTTATGGAGGAGATCAAAAGGAAATACAGAGTGGACATTAATGGGAACCCAAGAGCTCTGAGGAGGTTGAGAACTGCATGCGAAAGGGCAAAAAGAACACTCTCGTCTACATTGACTACAAACATTGAGATAGATGCCTTATTTCAAGGCATTGACTTCTGTTCTTCAATCACTCGTGCAAAGTTCGATGAAATCAATATGAGACTCTTTCAAGAGTGTTTGGAGACAGTAGATAACTGTCTTAATGATGCTAAGATGGACAAGACCAGTGTGCATGATATTGTACTTGTTGGTGGCTCTTCTAGGATTCCTAAAGTGCAGCAACTATTGCAGGATTTCTTCAACGGCAAGGATCTGTGCAAGAGCATCCACCCGGACGAAGCTGTTGCTTACGGTGCAGCTGTTCAAGCTGCTTCGTTGTGTGAAGACATTCAGAATATTCCTGACTTGGTGCTGTTGGATGTAACACCACTCTCACTTGGTACATATACAACGGGAGATATCATGGGTGTAATGATTCCCAGGAATACTAGAATTCCGGTAAAAAAGACAGAAGTGTATGCAACAGTTTACGATAATCAAACGTGTGCCTCAGTTAAGGTTTATGAGGGTGAAAGAACAAAAGCCAGTAACAACAATTTGCTGGGGCTTTTTAGTATAACCTTTCCTCCAGCTCCCCGTGGCTCTCCTGTTCTTGTGTGCTTTGTCATCGATGAGAATGGTACTCTGTCTGTTTCTGCCGAGGATCAAACCACGGGCAATAAAAACCAGATTAGCATAACCAACAGCAGAGAAAGACTATCAGCTGAAGAAATGAGTAGAATGATTGAAGAAGCTAAAATTTATGAGGCCGAAGATAGGAAGTTCCTTAGAAAGGCTAAGGCAATGAATTCTTTGCATGATTACGTTTACAAGATGACGAATGCTTTGAAGGACAAGTATACCAGATCAAAGCTTTCCTTGCAACAAAGGTTAAACATCAGTACTGCAATTACTAAGGTCACATGTTTGCTTGATGATGATAATCACCAGGTTGATGTGGATGTATTTGAGGATTATCTGAAGGAACTCGAGAGCCTCTTTGATCAGATATTCAGCATCAACGATTAG 1854 0.4223 MARKNEGCAVGIDLGTTYSCVAVWQEQQGRVEIIHNDQGNNITPSFVAFNDKQRLIGDAAKNQAATNPENTVFDAKRLIGRKYSDPIVQKDKRLWPFKVIPGDGDKPMIVVNYKGQQKYLSAEEISSMVLSKMREIAETFQGKPVRNAVVTVPAHFNDSQRKATVDAGTIAGLNVMRIINEPTAAAIAYGFDKGIRSVGERNLLVFDLGGGTFDVSILTVKDKVFQVKVTAGNTHLGGEDIDNRMVEYFMEEIKRKYRVDINGNPRALRRLRTACERAKRTLSSTLTTNIEIDALFQGIDFCSSITRAKFDEINMRLFQECLETVDNCLNDAKMDKTSVHDIVLVGGSSRIPKVQQLLQDFFNGKDLCKSIHPDEAVAYGAAVQAASLCEDIQNIPDLVLLDVTPLSLGTYTTGDIMGVMIPRNTRIPVKKTEVYATVYDNQTCASVKVYEGERTKASNNNLLGLFSITFPPAPRGSPVLVCFVIDENGTLSVSAEDQTTGNKNQISITNSRERLSAEEMSRMIEEAKIYEAEDRKFLRKAKAMNSLHDYVYKMTNALKDKYTRSKLSLQQRLNISTAITKVTCLLDDDNHQVDVDVFEDYLKELESLFDQIFSIND 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00485 617 FunFam Heat shock protein 70 10 199 - -
Viun6g00485 617 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 393 544 IPR029047 -
Viun6g00485 617 PRINTS 70kDa heat shock protein signature 60 68 - -
Viun6g00485 617 PRINTS 70kDa heat shock protein signature 371 391 - -
Viun6g00485 617 PRINTS 70kDa heat shock protein signature 476 492 - -
Viun6g00485 617 PRINTS 70kDa heat shock protein signature 8 21 - -
Viun6g00485 617 PRINTS 70kDa heat shock protein signature 38 50 - -
Viun6g00485 617 PRINTS 70kDa heat shock protein signature 339 355 - -
Viun6g00485 617 PRINTS 70kDa heat shock protein signature 397 416 - -
Viun6g00485 617 PRINTS 70kDa heat shock protein signature 211 221 - -
Viun6g00485 617 PRINTS 70kDa heat shock protein signature 148 168 - -
Viun6g00485 617 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Viun6g00485 617 FunFam heat shock 70 kDa protein-like 73 128 - -
Viun6g00485 617 SUPERFAMILY Actin-like ATPase domain 200 388 IPR043129 -
Viun6g00485 617 SUPERFAMILY Actin-like ATPase domain 8 193 IPR043129 -
Viun6g00485 617 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Viun6g00485 617 Gene3D - 196 368 - -
Viun6g00485 617 Gene3D - 10 386 - -
Viun6g00485 617 Gene3D Actin; Chain A, domain 4 237 320 - -
Viun6g00485 617 PANTHER HEAT SHOCK PROTEIN 70KDA 9 566 IPR013126 GO:0005524|GO:0140662
Viun6g00485 617 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 516 613 IPR029048 -
Viun6g00485 617 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 394 546 IPR029047 -
Viun6g00485 617 FunFam Heat shock cognate 70 kDa protein 2 321 368 - -
Viun6g00485 617 Pfam Hsp70 protein 9 613 IPR013126 GO:0005524|GO:0140662
Viun6g00485 617 FunFam Heat shock 70 kDa 237 320 - -
Viun6g00485 617 Gene3D - 73 128 - -
Viun6g00485 617 Gene3D - 545 615 IPR029048 -
Viun6g00485 617 ProSitePatterns Heat shock hsp70 proteins family signature 3. 342 356 IPR018181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00485 Viun-Chr6 12701804 12704560 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00485 1 614 Calmodulin-binding Proteins AT3G12580 65.964 0.0 831
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00485 K03283 - gmx:102667572 890.567